Statistical Analysis of RNA Backbone. - Eli Hershkovitz; Guillermo Sapiro; Allen R. Tannenbaum; Loren Dean Williams (IEEE ACM Trans. Comput. Biol. Bioinform., 2006)

The phosphate clamp: a small and independent motif for nucleic acid backbone recognition. - Seiji Komeda; Tinoush Moulaei; Masahiko Chikuma; Akira Odani; Ralph Kipping; Nicholas P. Farrell; Loren Dean Williams (Nucleic Acids Res., 2011)

ProteoVision: web server for advanced visualization of ribosomal proteins. - Petar I. Penev; Holly M. McCann; Caeden D. Meade; Claudia Alvarez-Carreño; Aparna Maddala; Chad R. Bernier; Vasanta l Chivukula; Maria Ahmad; Burak Gulen; Aakash Sharma; Loren Dean Williams; Anton S. Petrov (Nucleic Acids Res., 2021)

TwinCons: Conservation score for uncovering deep sequence similarity and divergence. - Petar I. Penev; Claudia Alvarez-Carreño; Eric Smith; Anton S. Petrov; Loren Dean Williams (PLoS Comput. Biol., 2021)