Predicting Protein Folding Classes without Overly Relying on Homology. - Mark Craven; Richard J. Mural; Loren J. Hauser; Edward C. Uberbacher (ISMB, 1995)

Developing measures for microbial genome assembly quality control. - Rachel M. Adams; Jason B. Harris; Jeremy J. Jay; Beth G. Johnson; Miriam L. Land; Loren J. Hauser (BMC Bioinform., 2010)

Prodigal: prokaryotic gene recognition and translation initiation site identification. - Doug Hyatt; Gwo-Liang Chen; Philip F. LoCascio; Miriam L. Land; Frank W. Larimer; Loren J. Hauser (BMC Bioinform., 2010)

Gene and translation initiation site prediction in metagenomic sequences. - Doug Hyatt; Philip F. LoCascio; Loren J. Hauser; Edward C. Uberbacher (Bioinform., 2012)

Assessment of genome annotation using gene function similarity within the gene neighborhood. - Se-Ran Jun; Intawat Nookaew; Loren J. Hauser; Andrey Gorin (BMC Bioinform., 2017)