A non-biased framework for the annotation and classification of the non-miRNA small RNA transcriptome. - Lorena Pantano; Xavier Estivill; Eulalia Martí (Bioinform., 2011)

InvFEST, a database integrating information of polymorphic inversions in the human genome. - Alexander Martínez-Fundichely; Sònia Casillas; Raquel Egea; Miquel Ràmia; Antonio Barbadilla; Lorena Pantano; Marta Puig; Mario Cáceres (Nucleic Acids Res., 2014)

Specific small-RNA signatures in the amygdala at premotor and motor stages of Parkinson's disease revealed by deep sequencing analysis. - Lorena Pantano; Marc R. Friedländer; Geòrgia Escaramís; Esther Lizano; Joan Pallarès-Albanell; Isidre Ferrer; Xavier Estivill; Eulalia Martí (Bioinform., 2016)

bcbioRNASeq: R package for bcbio RNA-seq analysis. - Michael J. Steinbaugh; Lorena Pantano; Rory D. Kirchner; Víctor Barrera; Brad A. Chapman; Mary E. Piper; Meeta Mistry; Radhika S. Khetani; Kayleigh Rutherford; Oliver Hofmann 001; John N. Hutchinson; Shannan J. Ho Sui (F1000Research, 2017)

Viewing RNA-seq data on the entire human genome. - Eric M. Weitz; Lorena Pantano; Jingzhi Zhu; Bennett Upton; Ben Busby (F1000Research, 2017)

Visualization of the small RNA transcriptome using seqclusterViz. - Lorena Pantano; Francisco Pantano; Eulalia Martí; Shannan J. Ho Sui (F1000Research, 2019)

Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API. - Thomas Desvignes; Phillipe Loher; Karen Eilbeck; Jeffery Ma; Gianvito Urgese; Bastian Fromm; Jason Sydes; Ernesto Aparicio-Puerta; Víctor Barrera; Roderic Espín; Florian Thibord; Xavier Bofill-De Ros; et al. (Bioinform., 2020)