On How to Improve FPGA-Based Systems Design Productivity via SDAccel. - Giulia Guidi; Enrico Reggiani; Lorenzo Di Tucci; Gianluca Durelli; Michaela Blott; Marco D. Santambrogio (IPDPS Workshops, 2016)

ProFAX: A hardware acceleration of a protein folding algorithm. - Giulia Guidi; Lorenzo Di Tucci; Marco D. Santambrogio (RTSI, 2016)

Towards exascale computing with heterogeneous architectures. - Kenneth O'Brien; Lorenzo Di Tucci; Gianluca Durelli; Michaela Blott (DATE, 2017)

Architectural optimizations for high performance and energy efficient Smith-Waterman implementation on FPGAs using OpenCL. - Lorenzo Di Tucci; Kenneth O'Brien; Michaela Blott; Marco D. Santambrogio (DATE, 2017)

The Role of CAD Frameworks in Heterogeneous FPGA-Based Cloud Systems. - Lorenzo Di Tucci; Marco Rabozzi; Luca Stornaiuolo; Marco D. Santambrogio (ICCD, 2017)

A Highly Scalable and Efficient Parallel Design of N-Body Simulation on FPGA. - Emanuele Del Sozzo; Lorenzo Di Tucci; Marco D. Santambrogio (IPDPS Workshops, 2017)

HUGenomics: A support to personalized medicine research. - Lorenzo Di Tucci; Giulia Guidi; Sara Notargiacomo; Luca Cerina; Alberto Scolari; Marco D. Santambrogio (RTSI, 2017)

Five-point algorithm: An efficient cloud-based FPGA implementation. - Marco Rabozzi; Emanuele Del Sozzo; Lorenzo Di Tucci; Marco D. Santambrogio (ASAP, 2018)

FPGA-based PairHMM Forward Algorithm for DNA Variant Calling. - Davide Sampietro; Chiara Crippa; Lorenzo Di Tucci; Emanuele Del Sozzo; Marco D. Santambrogio (ASAP, 2018)

A Scalable FPGA Design for Cloud N-Body Simulation. - Emanuele Del Sozzo; Marco Rabozzi; Lorenzo Di Tucci; Donatella Sciuto; Marco D. Santambrogio (ASAP, 2018)

A Parallel, Energy Efficient Hardware Architecture for the merAligner on FPGA Using Chisel HCL. - Lorenzo Di Tucci; Davide Conficconi; Alessandro Comodi; Steven A. Hofmeyr; David Donofrio; Marco D. Santambrogio (IPDPS Workshops, 2018)

EXTRA: an open platform for reconfigurable architectures. - Catalin Bogdan Ciobanu; Giulio Stramondo; Ana Lucia Varbanescu; Andreas Brokalakis; Antonis Nikitakis; Lorenzo Di Tucci; Marco Rabozzi; Luca Stornaiuolo; Marco D. Santambrogio; Grigorios Chrysos 001; Charalampos Vatsolakis; Georgios Charitopoulos; et al. (SAMOS, 2018)

circFA: a FPGA-based circular RNA aligner. - Alberto Zeni; Francesco Peverelli; Enrico Cabri; Lorenzo Di Tucci; Luca Cerina; Marco D. Santambrogio (BHI, 2019)

Automated Acceleration of Dataflow-Oriented C Applications on FPGA-Based Systems. - Francesco Peverelli; Marco Rabozzi; Salvatore Cardamone; Emanuele Del Sozzo; Alex J. W. Thom; Marco D. Santambrogio; Lorenzo Di Tucci (FCCM, 2019)

Automated Design Space Exploration and Roofline Analysis for FPGA-Based HLS Applications. - Marco Siracusa; Marco Rabozzi; Emanuele Del Sozzo; Marco D. Santambrogio; Lorenzo Di Tucci (FCCM, 2019)

An FPGA-Based Computing Infrastructure Tailored to Efficiently Scaffold Genome Sequences. - Alberto Zeni; Matteo Crespi; Lorenzo Di Tucci; Marco D. Santambrogio (FCCM, 2019)

A CAD-based methodology to optimize HLS code via the Roofline model. - Marco Siracusa; Marco Rabozzi; Emanuele Del Sozzo; Lorenzo Di Tucci; Samuel Williams 001; Marco D. Santambrogio (ICCAD, 2020)

Leveraging Succinct Data Structures for DNA Sequence Mapping on FPGA. - Guido Walter Di Donato; Alberto Zeni; Lorenzo Di Tucci; Marco D. Santambrogio (IPDPS Workshops, 2020)

GPU accelerated partial order multiple sequence alignment for long reads self-correction. - Francesco Peverelli; Lorenzo Di Tucci; Marco D. Santambrogio; Nan Ding 006; Steven A. Hofmeyr; Aydin Buluç; Leonid Oliker; Katherine A. Yelick (IPDPS Workshops, 2020)

SALSA: A Domain Specific Architecture for Sequence Alignment. - Lorenzo Di Tucci; Riyadh Baghdadi; Saman P. Amarasinghe; Marco D. Santambrogio (IPDPS Workshops, 2020)

Complex Data Imputation by Auto-Encoders and Convolutional Neural Networks - A Case Study on Genome Gap-Filling. - Luca Cappelletti; Tommaso Fontana; Guido Walter Di Donato; Lorenzo Di Tucci; Elena Casiraghi; Giorgio Valentini (Comput., 2020)

Hugenomic: exploiting FPGAs as hardware accelerators in the genomic domain. - Lorenzo Di Tucci (2020)

The Importance of Being X-Drop: High Performance Genome Alignment on Reconfigurable Hardware. - Alberto Zeni; Guido Walter Di Donato; Lorenzo Di Tucci; Marco Rabozzi; Marco D. Santambrogio (FCCM, 2021)

From Distributed Sensing to Virtual Sensors: a Domain-Specific Language for Reactive Centralized Edge-Fog-Cloud Computation. - Andrea Damiani; Marco Rabozzi; Kaixi Matteo Chen; Lorenzo Di Tucci; Marco D. Santambrogio (EUC, 2022)

A Comprehensive Methodology to Optimize FPGA Designs via the Roofline Model. - Marco Siracusa; Emanuele Del Sozzo; Marco Rabozzi; Lorenzo Di Tucci; Samuel Williams 001; Donatella Sciuto; Marco Domenico Santambrogio (IEEE Trans. Computers, 2022)

New Solution For a (Scaff)Old Problem: an FPGA Approach. - Alberto Zeni; Emanuele Del Sozzo; Beatrice Branchini; Lorenzo Di Tucci; Marco D. Santambrogio (IPDPS Workshops, 2023)