A comparison between parallelization approaches in molecular dynamics simulations on GPUs. - Lorenzo Rovigatti; Petr Sulc; István Z. Reguly; Flavio Romano (J. Comput. Chem., 2015)

TacoxDNA: A user-friendly web server for simulations of complex DNA structures, from single strands to origami. - Antonio Suma; Erik Poppleton; Michael Matthies; Petr Sulc; Flavio Romano; Ard A. Louis; Jonathan P. K. Doye; Cristian Micheletti; Lorenzo Rovigatti (J. Comput. Chem., 2019)

OxDNA.org: a public webserver for coarse-grained simulations of DNA and RNA nanostructures. - Erik Poppleton; Roger Romero; Aatmik Mallya; Lorenzo Rovigatti; Petr Sulc (Nucleic Acids Res., 2021)

oxDNA: coarse-grained simulations of nucleic acids made simple. - Erik Poppleton; Michael Matthies; Debesh Mandal; Flavio Romano; Petr Sulc; Lorenzo Rovigatti (J. Open Source Softw., 2023)

CLEAVING: a LAMMPS package to compute surface free energies. - Nicodemo Di Pasquale; Ruslan L. Davidchack; Lorenzo Rovigatti (J. Open Source Softw., 2024)