Reducing the Dimensionality of Hyperspectral Data using Diffusion Maps. - Louis du Plessis; Steven B. Damelin; Michael Sears (IGARSS (4), 2009)

Analysis of hyperspectral data with diffusion maps and Fuzzy ART. - Rui Xu 001; Louis du Plessis; Steven B. Damelin; Michael Sears; Donald C. Wunsch (IJCNN, 2009)

The what, where, how and why of gene ontology - a primer for bioinformaticians. - Louis du Plessis; Nives Skunca; Christophe Dessimoz (Briefings Bioinform., 2011)

Establishment and cryptic transmission of Zika virus in Brazil and the Americas. - Nuno R. Faria; Joshua Quick; I. M. Claro; Julien Thézé; J. G. de Jesus; Marta Giovanetti; Moritz U. G. Kraemer; S. C. Hill; Allison Black; A. C. Da Costa; L. C. Franco; S. P. Silva; et al. (Nat., 2017)

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. - Remco R. Bouckaert; Timothy G. Vaughan; Joëlle Barido-Sottani; Sebastián Duchêne; Mathieu Fourment; Alexandra Gavryushkina; Joseph Heled; Graham Jones; Denise Kühnert; Nicola De Maio; Michael Matschiner; Fábio K. Mendes; et al. (PLoS Comput. Biol., 2019)

A computationally tractable birth-death model that combines phylogenetic and epidemiological data. - Alexander Eugene Zarebski; Louis du Plessis; Kris V. Parag; Oliver George Pybus (PLoS Comput. Biol., 2022)

EpiFusion: Joint inference of the effective reproduction number by integrating phylodynamic and epidemiological modelling with particle filtering. - Ciara E. Judge; Timothy G. Vaughan; Timothy Russell; Sam Abbott; Louis du Plessis; Tanja Stadler; Oliver Brady; Sarah Hill (PLoS Comput. Biol., 2024)