Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads. - Ryan R. Wick; Louise M. Judd; Claire L. Gorrie; Kathryn E. Holt (PLoS Comput. Biol., 2017)

Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks. - Ryan R. Wick; Louise M. Judd; Kathryn E. Holt (PLoS Comput. Biol., 2018)

Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing. - Ryan R. Wick; Louise M. Judd; Kathryn E. Holt (PLoS Comput. Biol., 2023)