Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data. - Hui Yu 014; Feng Wang; Kang Tu; Lu Xie; Yuan-Yuan Li; Yi-Xue Li (BMC Bioinform., 2007)

ITFP: an integrated platform of mammalian transcription factors. - Guangyong Zheng; Kang Tu; Qing Yang; Yun Xiong; Chaochun Wei; Lu Xie; Yangyong Zhu; Yixue Li (Bioinform., 2008)

The combination approach of SVM and ECOC for powerful identification and classification of transcription factor. - Guangyong Zheng; Ziliang Qian; Qing Yang; Chaochun Wei; Lu Xie; Yangyong Zhu; Yixue Li (BMC Bioinform., 2008)

Acoustic Field Measurement and Analysis for a Spherical Phased Array by PVDF Needle Hydrophone. - Jingfeng Bai; Xiumei Huang; Lu Xie; Yazhu Chen (BMEI, 2009)

PAnnBuilder: an R package for assembling proteomic annotation data. - Hong Li 013; Guohui Ding 001; Lu Xie; Yixue Li (Bioinform., 2009)

Web-based interrogation of gene expression signatures using EXALT. - Jun Wu; Qingchao Qiu; Lu Xie; Joseph Fullerton; Jian Yu; Yu Shyr; Alfred L. George Jr.; Yajun Yi (BMC Bioinform., 2009)

Dysfunctional gene/protein networks in hepatitis C virus-induced hepatocellular cirrhosis and carcinoma. - Tao Huang 004; Guohui Ding 001; Yixue Li; Lei Liu; Eugene Tan; Hongyue Dai; Qi Liu 024; Zhidong Tu; Lu Xie (BCB, 2010)

TF-centered downstream gene set enrichment analysis: Inference of causal regulators by integrating TF-DNA interactions and protein post-translational modifications information. - Qi Liu 024; Yejun Tan; Tao Huang 004; Guohui Ding 001; Zhidong Tu; Lei Liu; Yixue Li; Hongyue Dai; Lu Xie (BMC Bioinform., 2010)

dbDEPC: a database of Differentially Expressed Proteins in human Cancers. - Hong Li 013; Ying He; Guohui Ding 001; Chuan Wang; Lu Xie; Yixue Li (Nucleic Acids Res., 2010)

The role of Hepatitis C Virus in the dynamic protein interaction networks of hepatocellular cirrhosis and carcinoma. - Tao Huang 004; Lei Liu; Qi Liu 024; Guohui Ding 001; Yejun Tan; Zhidong Tu; Yixue Li; Hongyue Dai; Lu Xie (Int. J. Comput. Biol. Drug Des., 2011)

Combinatorial network of transcriptional regulation and microRNA regulation in human cancer. - Hui Yu 014; Kang Tu; Yi-Jie Wang; Jun-Zhe Mao; Lu Xie; Yuan-Yuan Li; Yi-Xue Li (BMC Syst. Biol., 2012)

dbDEPC 2.0: updated database of differentially expressed proteins in human cancers. - Ying He; Menghuan Zhang; Yuanhu Ju; Zhong-Hao Yu; Daqing Lv; Han Sun; Weilan Yuan; Fei He; Jianshe Zhang; Hong Li 013; Jing Li; Rui Wang-Sattler; et al. (Nucleic Acids Res., 2012)

SysPTM 2.0: an updated systematic resource for post-translational modification. - Jing Li; Jia Jia 002; Hong Li 013; Jian Yu; Han Sun; Ying He; Daqing Lv; Xiaojuan Yang; Michael O. Glocker; Liang-Xiao Ma; Jiabei Yang; Ling Li; et al. (Database J. Biol. Databases Curation, 2014)

Application of microRNA and mRNA expression profiling on prognostic biomarker discovery for hepatocellular carcinoma. - Lin Wei; Baofeng Lian; Yuannv Zhang; Wei Li; Jianren Gu; Xianghuo He; Lu Xie (BMC Genom., 2014)

Nonsynonymous Single-Nucleotide Variations on Some Posttranslational Modifications of Human Proteins and the Association with Diseases. - Bo Sun; Menghuan Zhang; Peng Cui 003; Hong Li 013; Jia Jia Dong; Yixue Li; Lu Xie (Comput. Math. Methods Medicine, 2015)

The Structural Characterization of Tumor Fusion Genes and Proteins. - Dandan Wang; Daixi Li; Guangrong Qin; Wen Zhang; Jian Ouyang; Menghuan Zhang; Lu Xie (Comput. Math. Methods Medicine, 2015)

Medoidshift clustering applied to genomic bulk tumor data. - Theodore Roman; Lu Xie; Russell Schwartz (BMC Genom., 2016)

Integrative analysis of methylation and transcriptional profiles to predict aging and construct aging specific cross-tissue networks. - Yin Wang; Tao Huang 004; Lu Xie; Lei Liu (BMC Syst. Biol., 2016)

Prediction of synergistic anti-cancer drug combinations based on drug target network and drug induced gene expression profiles. - Xiangyi Li; Yingjie Xu; Hui Cui 003; Tao Huang 004; Disong Wang; Baofeng Lian; Wei Li; Guangrong Qin; Lanming Chen; Lu Xie (Artif. Intell. Medicine, 2017)

Automatic facial flaw detection and retouching via discriminative structure tensor. - Xin Liu 011; Lu Xie; Bineng Zhong; Ji-Xiang Du; Qinmu Peng (IET Image Process., 2017)

Automated deconvolution of structured mixtures from heterogeneous tumor genomic data. - Theodore Roman; Lu Xie; Russell Schwartz (PLoS Comput. Biol., 2017)

Derivative-Free Optimization of Rate Parameters of Capsid Assembly Models from Bulk in Vitro Data. - Lu Xie; Gregory R. Smith; Russell Schwartz (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

dbDEPC 3.0: the database of differentially expressed proteins in human cancer with multi-level annotation and drug indication. - Qingmin Yang; Yuqi Zhang; Hui Cui 003; Lanming Chen; Yong Zhao; Yong Lin; Menghuan Zhang; Lu Xie (Database J. Biol. Databases Curation, 2018)

Investigation of lipid metabolism dysregulation and the effects on immune microenvironments in pan-cancer using multiple omics data. - Yang Hao; Daixi Li; Yong Xu; Jian Ouyang; Yongkun Wang; Yuqi Zhang; Baoguo Li; Lu Xie; Guangrong Qin (BMC Bioinform., 2019)

生成对抗网络GAN综述 (Review of Generative Adversarial Network). - Xianyi Cheng; Lu Xie; Jianxin Zhu; Bin Hu; Quan Shi (计算机科学, 2019)

dbPepNeo: a manually curated database for human tumor neoantigen peptides. - Xiaoxiu Tan; Daixi Li; Pengjie Huang; Xingxing Jian; Huihui Wan; Guangzhi Wang; Yuyu Li; Jian Ouyang; Yong Lin; Lu Xie (Database J. Biol. Databases Curation, 2020)

A CAN-Based Urea Line Heater Diagnostics Development and Experimental Validation for Selective Catalytic Reduction (SCR) System. - Lu Xie; Guozhang Jiang; Feng Qian (IEEE Access, 2021)

Research on influencing factors of artificial intelligence multi-cloud scheduling applied talent training based on DEMATEL-TAISM. - Yi-jie Bian; Lu Xie; Jing-qi Li (J. Cloud Comput., 2022)

Estimating Fractional Vegetation Cover Changes in Desert Regions Using RGB Data. - Lu Xie; Xiang Meng; Xiaodi Zhao; Liyong Fu; Ram P. Sharma; Hua Sun 002 (Remote. Sens., 2022)

Self-supervised pairwise-sample resistance model for few-shot classification. - Weigang Li 004; Lu Xie; Ping Gan; Yuntao Zhao (Appl. Intell., 2023)

Prototype Consistency Learning for Medical Image Segmentation by Cross Pseudo Supervision. - Lu Xie; Weigang Li 004; Yongqiang Wang; Yuntao Zhao (Cogn. Comput., 2024)

Pairwise-Pixel Self-Supervised and Superpixel-Guided Prototype Contrastive Loss for Weakly Supervised Semantic Segmentation. - Lu Xie; Weigang Li 004; Yuntao Zhao (Cogn. Comput., 2024)

Prediction models for postoperative recurrence of non-lactating mastitis based on machine learning. - Jiaye Sun; Shijun Shao; Hua Wan; Xueqing Wu 005; Jiamei Feng; Qingqian Gao; Wenchao Qu; Lu Xie (BMC Medical Informatics Decis. Mak., 2024)

Hard example learning based on neural collapse for class-imbalanced semantic segmentation. - Lu Xie; Weigang Li 004; Yuntao Zhao (Appl. Soft Comput., 2025)

AbNumPro: A comprehensive offline toolkit for antibody numbering and antigen-binding region prediction. - Wenzhen Li; Hongyan Lin; Lvxin Peng; Qianhu Jiang; Yushu Gou; Lu Xie; Jian Huang 004 (Softw. Impacts, 2025)