Assessment of Common Regions and Specific Footprints of DNA Copy Number Aberrations Across Multiple Affymetrix SNP Mapping Arrays. - Roberta Spinelli; Ingrid Cifola; Stefano Ferrero; Luca Beltrame; Paolo Mocarelli; Cristina Battaglia (WILF, 2007)

Locally Adaptive Statistical Procedures for the Integrative Analysis on Genomic and Transcriptional Data. - Mattia Zampieri; Ingrid Cifola; Dario Basso; Roberta Spinelli; Luca Beltrame; Clelia Peano; Cristina Battaglia; Silvio Bicciato (WILF, 2007)

The Biological Connection Markup Language: a SBGN-compliant format for visualization, filtering and analysis of biological pathways. - Luca Beltrame; Enrica Calura; Razvan R. Popovici; Lisa Rizzetto; Damariz Rivero Guedez; Michele Donato; Chiara Romualdi; Sorin Draghici; Duccio Cavalieri (Bioinform., 2011)

Pathway Processor 2.0: a web resource for pathway-based analysis of high-throughput data. - Luca Beltrame; Luca Bianco; Paolo Fontana; Duccio Cavalieri (Bioinform., 2013)

A pan-cancer landscape of pathogenic somatic copy number variations. - Tommaso Becchi; Luca Beltrame; Laura Mannarino; Enrica Calura; Sergio Marchini; Chiara Romualdi (J. Biomed. Informatics, 2023)

SAMURAI: shallow analysis of copy number alterations using a reproducible and integrated bioinformatics pipeline. - Sara Potente; Diego Boscarino; Dino Paladin; Sergio Marchini; Luca Beltrame; Chiara Romualdi (Briefings Bioinform., 2024)

Integrated approach to generate artificial samples with low tumor fraction for somatic variant calling benchmarking. - Aldo Sergi; Luca Beltrame; Sergio Marchini; Marco Masseroli (BMC Bioinform., 2024)