LErNet: characterization of lncRNAs via context-aware network expansion and enrichment analysis. - Vincenzo Bonnici; Simone Caligola; Giulia Fiorini; Luca Giudice; Rosalba Giugno (CIBCB, 2019)

netDx: Software for building interpretable patient classifiers by multi-'omic data integration using patient similarity networks. - Shraddha Pai; Philipp Weber; Ruth Isserlin; Hussam Kaka; Shirley Hui; Muhammad Ahmad Shah; Luca Giudice; Rosalba Giugno; Anne Krogh Nøhr; Jan Baumbach; Gary D. Bader (F1000Research, 2020)

StellarPath: Hierarchical-vertical multi-omics classifier synergizes stable markers and interpretable similarity networks for patient profiling. - Luca Giudice; Ahmed Mohamed; Tarja Malm (PLoS Comput. Biol., 2024)