Phosfinder: a web server for the identification of phosphate-binding sites on protein structures. - Luca Parca; Iolanda Mangone; Pier Federico Gherardini; Gabriele Ausiello; Manuela Helmer-Citterich (Nucleic Acids Res., 2011)

PTMcode: a database of known and predicted functional associations between post-translational modifications in proteins. - Pablo Minguez; Ivica Letunic; Luca Parca; Peer Bork (Nucleic Acids Res., 2013)

Nucleos: a web server for the identification of nucleotide-binding sites in protein structures. - Luca Parca; Fabrizio Ferrè; Gabriele Ausiello; Manuela Helmer-Citterich (Nucleic Acids Res., 2013)

PTMcode v2: a resource for functional associations of post-translational modifications within and between proteins. - Pablo Minguez; Ivica Letunic; Luca Parca; Luz Garcia-Alonso; Joaquín Dopazo; Jaime Huerta-Cepas; Peer Bork (Nucleic Acids Res., 2015)

Systematic identification of phosphorylation-mediated protein interaction switches. - Matthew J. Betts; Oliver Wichmann; Mathias Utz; Timon Andre; Evangelia Petsalaki; Pablo Minguez; Luca Parca; Frederick P. Roth; Anne-Claude Gavin; Peer Bork; Robert B. Russell (PLoS Comput. Biol., 2017)

Kinome-wide identification of phosphorylation networks in eukaryotic proteomes. - Luca Parca; Bruno Ariano; Andrea Cabibbo; Marco Paoletti; Annalaura Tamburrini; Antonio Palmeri; Gabriele Ausiello; Manuela Helmer-Citterich (Bioinform., 2019)

PDBe-KB: a community-driven resource for structural and functional annotations. - Mihaly Varadi; John M. Berrisford; Mandar S. Deshpande; Sreenath Nair; Aleksandras Gutmanas; David R. Armstrong; Lukás Pravda; Bissan Al-Lazikani; Stephen Anyango; Geoffrey J. Barton; Karel Berka; Tom L. Blundell; et al. (Nucleic Acids Res., 2020)

A comparative benchmark of classic DNA motif discovery tools on synthetic data. - Stefano Castellana; Tommaso Biagini; Luca Parca; Francesco Petrizzelli; Salvatore Daniele Bianco; Angelo Luigi Vescovi; Massimo Carella; Tommaso Mazza (Briefings Bioinform., 2021)

MitImpact 3: modeling the residue interaction network of the Respiratory Chain subunits. - Stefano Castellana; Tommaso Biagini; Francesco Petrizzelli; Luca Parca; Noemi Panzironi; Viviana Caputo; Angelo L. Vescovi; Massimo Carella; Tommaso Mazza (Nucleic Acids Res., 2021)