Taxonomy-Based Routing Indices for Peer-to-Peer Networks. - Luca Pireddu; Mario A. Nascimento (Workshop on Peer-to-Peer Information Retrieval, 2004)

The Proteome Analyst Suite of Automated Function Prediction Tools. - Brett Poulin; Duane Szafron; Paul Lu; Russell Greiner; David S. Wishart; Roman Eisner; Alona Fyshe; Brandon Pearcy; Luca Pireddu (AAAI, 2005)

Pathway Analyst–Automated Metabolic Pathway Prediction. - Luca Pireddu; Brett Poulin; Duane Szafron; Paul Lu; David S. Wishart (CIBCB, 2005)

The Path-A metabolic pathway prediction web server. - Luca Pireddu; Duane Szafron; Paul Lu; Russell Greiner (Nucleic Acids Res., 2006)

MMsINC: a large-scale chemoinformatics database. - Joel Masciocchi; Gianfranco Frau; Marco Fanton; Mattia Sturlese; Matteo Floris; Luca Pireddu; Piergiorgio Palla; Fabian Cedrati; Patricia Rodriguez-Tomé; Stefano Moro (Nucleic Acids Res., 2009)

Fingerprint-based detection of acute aquatic toxicity. - Luca Pireddu; Lisa Michielan; Matteo Floris; Patricia Rodriguez-Tomé; Stefano Moro (J. Cheminformatics, 2010)

SEAL: a distributed short read mapping and duplicate removal tool. - Luca Pireddu; Simone Leo; Gianluigi Zanetti (Bioinform., 2011)

A Hadoop-Galaxy adapter for user-friendly and scalable data-intensive bioinformatics in Galaxy. - Luca Pireddu; Simone Leo; Nicola Soranzo; Gianluigi Zanetti (BCB, 2014)

An automated infrastructure to support high-throughput bioinformatics. - Gianmauro Cuccuru; Simone Leo; Luca Lianas; Michele Muggiri; Andrea Pinna 003; Luca Pireddu; Paolo Uva; Andrea Angius; Giorgio Fotia; Gianluigi Zanetti (HPCS, 2014)

BioBlend.objects: metacomputing with Galaxy. - Simone Leo; Luca Pireddu; Gianmauro Cuccuru; Luca Lianas; Nicola Soranzo; Enis Afgan; Gianluigi Zanetti (Bioinform., 2014)

SeqPig: simple and scalable scripting for large sequencing data sets in Hadoop. - André Schumacher; Luca Pireddu; Matti Niemenmaa; Aleksi Kallio; Eija Korpelainen; Gianluigi Zanetti; Keijo Heljanko (Bioinform., 2014)

Scalable genomics: From raw data to aligned reads on Apache YARN. - Francesco Versaci; Luca Pireddu; Gianluigi Zanetti (IEEE BigData, 2016)

wft4galaxy: a workflow testing tool for galaxy. - Marco Enrico Piras; Luca Pireddu; Gianluigi Zanetti (Bioinform., 2017)

Distributed stream processing for genomics pipelines. - Francesco Versaci; Luca Pireddu; Gianluigi Zanetti (PeerJ Prepr., 2017)

Kafka interfaces for composable streaming genomics pipelines. - Francesco Versaci; Luca Pireddu; Gianluigi Zanetti (BHI, 2018)

TDM Edge Gateway: A Flexible Microservice-Based Edge Gateway Architecture for Heterogeneous Sensors. - Massimo Gaggero; Giovanni Busonera; Luca Pireddu; Gianluigi Zanetti (Euro-Par Workshops, 2019)

Container Orchestration on HPC Clusters. - Marco Enrico Piras; Luca Pireddu; Marco Moro; Gianluigi Zanetti (ISC Workshops, 2019)

Interoperable and scalable data analysis with microservices: applications in metabolomics. - Payam Emami Khoonsari; Pablo A. Moreno; Sven Bergmann; Joachim Burman; Marco Capuccini; Matteo Carone; Marta Cascante; Pedro de Atauri; Carles Foguet; Alejandra N. González-Beltrán; Thomas Hankemeier; Kenneth Haug; et al. (Bioinform., 2019)

The DeepHealth Toolkit: A Unified Framework to Boost Biomedical Applications. - Michele Cancilla; Laura Canalini; Federico Bolelli; Stefano Allegretti; Salvador Carrión; Roberto Paredes; Jon Ander Gómez; Simone Leo; Marco Enrico Piras; Luca Pireddu; Asaf Badouh; Santiago Marco-Sola; et al. (ICPR, 2020)

The openEHR Genomics Project. - Cecilia Mascia; Francesca Frexia; Paolo Uva; Gianluigi Zanetti; Luca Pireddu; Gideon Giacomelli; Christina Jaeger-Schmidt; Aurelie Tomczak; Simon Schumacher; Florian Kraecher; Roland Eils; Silje Ljosland Bakke; et al. (MIE, 2020)

ISO 23494: Biotechnology - Provenance Information Model for Biological Specimen And Data. - Rudolf Wittner; Petr Holub; Heimo Müller; Jörg Geiger; Carole A. Goble; Stian Soiland-Reyes; Luca Pireddu; Francesca Frexia; Cecilia Mascia; Elliot Fairweather; Jason R. Swedlow; Josh Moore; et al. (IPAW, 2021)

The DeepHealth Toolkit: A Key European Free and Open-Source Software for Deep Learning and Computer Vision Ready to Exploit Heterogeneous HPC and Cloud Architectures. - Marco Aldinucci; David Atienza; Federico Bolelli; Mónica Caballero; Iacopo Colonnelli; José Flich; Jon Ander Gómez; David González; Costantino Grana; Marco Grangetto; Simone Leo; Pedro López 001; et al. (Technologies and Applications for Big Data Value, 2022)

AI Support for Accelerating Histopathological Slide Examinations of Prostate Cancer in Clinical Studies. - Mauro Del Rio; Luca Lianas; Oskar Aspegren; Giovanni Busonera; Francesco Versaci; Renata Zelic; Per H. Vincent; Simone Leo; Andreas Pettersson; Olof Akre; Luca Pireddu (ICIAP Workshops (1), 2022)

EOSC-LIFE WP4 TOOLBOX: Toolbox for sharing of sensitive data - a concept description. - Jan-Willem Boiten; Christian Ohmann; Ayodeji Adeniran; Steve Canham; Mónica Cano Abadia; Gauthier Chassang; Maria Luisa Chiusano; Romain David 001; Maddalena Fratelli; Philip Gribbon; Petr Holub; Rebecca Ludwig; et al. (CoRR, 2022)

The EOSC-Life Workflow Collaboratory for the Life Sciences. - Carole A. Goble; Finn Bacall; Stian Soiland-Reyes; Stuart Owen; Ignacio Eguinoa; Bert Droesbeke; Hervé Ménager; Laura Rodríguez-Navas; José María Fernández 001; Björn A. Grüning; Simone Leo; Luca Pireddu; et al. (CoRDI, 2023)

Recording provenance of workflow runs with RO-Crate. - Simone Leo; Michael R. Crusoe; Laura Rodríguez-Navas; Raül Sirvent; Alexander Kanitz; Paul De Geest; Rudolf Wittner; Luca Pireddu; Daniel Garijo; José M. Fernández; Iacopo Colonnelli; Matej Gallo; et al. (CoRR, 2023)

WorkflowHub: a registry for computational workflows. - Johan Gustafsson 001; Sean R. Wilkinson; Finn Bacall; Luca Pireddu; Stian Soiland-Reyes; Simone Leo; Stuart Owen; Nick S. Juty; José María Fernández 001; Björn A. Grüning; Tom Brown; Hervé Ménager; et al. (CoRR, 2024)

An Ecosystem of Services for FAIR Computational Workflows. - Sean R. Wilkinson; Johan Gustafsson 001; Finn Bacall; Khalid Belhajjame; Salvador Capella; José María Fernández González; Jacob Fosso Tande; Luiz Gadelha; Daniel Garijo; Patricia Grubel; Björn A. Grüning; Farah Zaib Khan; et al. (CoRR, 2025)