An Evaluation of Ontology Exchange Languages for Bioinformatics. - Robin McEntire; Peter D. Karp; Neil F. Abernethy; David Benton; Gregg Helt; Matt DeJongh; Robert Kent; Anthony Kosky; Suzanna Lewis; Dan Hodnett; Eric P. Neumann; Frank Olken; et al. (ISMB, 2000)

Integrated bioinformatics application for automated target discovery. - Luca Toldo; Friedrich Rippmann (J. Assoc. Inf. Sci. Technol., 2005)

AEO: A Realism-Based Biomedical Ontology for the Representation of Adverse Events. - Yongqun He; Zuoshuang Xiang; Sirarat Sarntivijai; Luca Toldo; Werner Ceusters (ICBO, 2011)

Finding Patient Visits in EMR Using LUXID®. - Luca Toldo; Alexander Scheer (TREC, 2011)

BioCreative III interactive task: an overview. - Cecilia N. Arighi; Phoebe M. Roberts; Shashank Agarwal; Sanmitra Bhattacharya; Gianni Cesareni; Andrew Chatr-aryamontri; Simon Clematide; Pascale Gaudet; Michelle G. Giglio; Ian Harrow; Eva Huala; Martin Krallinger; et al. (BMC Bioinform., 2011)

Question Answering for Alzheimer Disease Using Information Retrieval. - Sanmitra Bhattacharya; Luca Toldo (CLEF (Online Working Notes/Labs/Workshop), 2012)

SBML2SMW Links Systems Biology, Text Mining and Semantic Web. - Abdul Mateen Rajput; Tobias Mathäß; Peter Haase 001; Alexander Scheer; Luca Toldo (ICDM (Workshops), 2012)

Extraction of Adverse Drug Effects from Medical Case Reports. - Harsha Gurulingappa; Abdul Mateen Rajput; Luca Toldo (J. Biomed. Semant., 2012)

A 2012 Workshop: Vaccine and Drug Ontology in the Study of Mechanism and Effect (VDOSME 2012). - Yongqun He; Luca Toldo; Gully Burns; Cui Tao; Darrell R. Abernethy (J. Biomed. Semant., 2012)

Development of a benchmark corpus to support the automatic extraction of drug-related adverse effects from medical case reports. - Harsha Gurulingappa; Abdul Mateen Rajput; Angus Roberts; Juliane Fluck; Martin Hofmann-Apitius; Luca Toldo (J. Biomed. Informatics, 2012)

Mining biomarker information in biomedical literature. - Erfan Younesi; Luca Toldo; Bernd Müller; Christoph M. Friedrich; Natalia Novac; Alexander Scheer; Martin Hofmann-Apitius; Juliane Fluck (BMC Medical Informatics Decis. Mak., 2012)

Agent based modeling of Treg-Teff cross regulation in relapsing-remitting multiple sclerosis. - Marzio Pennisi; Abdul Mateen Rajput; Luca Toldo; Francesco Pappalardo 001 (BMC Bioinform., 2013)

OAE: The Ontology of Adverse Events. - Yongqun He; Sirarat Sarntivijai; Yu Lin; Zuoshuang Xiang; Abra Guo; Shelley Zhang 002; Desikan Jagannathan; Luca Toldo; Cui Tao; Barry Smith 001 (J. Biomed. Semant., 2014)

Semi-Supervised Information Retrieval System for Clinical Decision Support. - Harsha Gurulingappa; Luca Toldo; Claudia Schepers; Alexander Bauer; Gerard Megaro (TREC, 2016)