PFstats: A Network-Based Open Tool for Protein Family Analysis. - Néli J. Fonseca-Júnior; Marcelo Q. L. Afonso; Lucas Carrijo de Oliveira; Lucas Bleicher (J. Comput. Biol., 2018)

A new method bridging graph theory and residue co-evolutionary networks for specificity determinant positions detection. - Néli José da Fonseca Jr.; Marcelo Querino Lima Afonso; Lucas Carrijo de Oliveira; Lucas Bleicher (Bioinform., 2019)

Coevolved Positions Represent Key Functional Properties in the Trypsin-Like Serine Proteases Protein Family. - Marcelo Querino Lima Afonso; Néli José da Fonseca Jr.; Lucas Carrijo de Oliveira; Francisco Pereira Lobo; Lucas Bleicher (J. Chem. Inf. Model., 2020)

CONAN: a web application to detect specificity determinants and functional sites by amino acids co-variation network analysis. - Néli J. Fonseca-Júnior; Marcelo Q. L. Afonso; Lucas Carrijo de Oliveira; Lucas Bleicher (Bioinform., 2021)