An Entity Resolution Framework for Deduplicating Proteins. - Lucas Lochovsky; Thodoros Topaloglou (DILS, 2008)

ACT: aggregation and correlation toolbox for analyses of genome tracks. - Justin Jee; Joel S. Rozowsky; Kevin Y. Yip; Lucas Lochovsky; Robert D. Bjornson; Guoneng Zhong; Zhengdong D. Zhang; Yutao Fu; Jie Wang; Zhiping Weng; Mark Gerstein (Bioinform., 2011)

PhyloPro: a web-based tool for the generation and visualization of phylogenetic profiles across Eukarya. - Xuejian Xiong; Hongyan Song; Tuan On; Lucas Lochovsky; Nicholas J. Provart; John Parkinson (Bioinform., 2011)

MOAT: efficient detection of highly mutated regions with the Mutations Overburdening Annotations Tool. - Lucas Lochovsky; Jing Zhang 062; Mark Gerstein (Bioinform., 2018)

NIMBus: a negative binomial regression based Integrative Method for mutation Burden Analysis. - Jing Zhang 062; Jason Liu 003; Patrick D. McGillivray; Caroline Yi; Lucas Lochovsky; Donghoon Lee 006; Mark Gerstein (BMC Bioinform., 2020)

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. - Esther Rheinbay; Morten Muhlig Nielsen; Federico Abascal; Jeremiah Wala; Ofer Shapira; Grace Tiao; Henrik Hornshøj; Julian M. Hess; Randi Istrup Juul; Ziao Lin; Lars Feuerbach; Radhakrishnan Sabarinathan; et al. (Nat., 2020)