proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes. - Daniel R. Mende; Ivica Letunic; Oleksandr M. Maistrenko; Thomas S. B. Schmidt; Alessio Milanese; Lucas Paoli; Ana Hernández-Plaza; Askarbek N. Orakov; Sofia K. Forslund; Shinichi Sunagawa; Georg Zeller; Jaime Huerta-Cepas; et al. (Nucleic Acids Res., 2020)

metaSNV v2: detection of SNVs and subspecies in prokaryotic metagenomes. - Thea Van Rossum; Paul I. Costea; Lucas Paoli; Renato Alves; Roman Thielemann; Shinichi Sunagawa; Peer Bork (Bioinform., 2022)