Unsupervised reduction of the dimensionality followed by supervised learning with a perceptron improves the classification of conditions in DNA microarray gene expression data. - Lucía Conde; Álvaro Mateos; Javier Herrero; Joaquín Dopazo (NNSP, 2002)

Improved Class Prediction in DNA Microarray Gene Expression Data by Unsupervised Reduction of the Dimensionality followed by Supervised Learning with a Perceptron. - Lucía Conde; Álvaro Mateos; Javier Herrero; Joaquín Dopazo (J. VLSI Signal Process., 2003)

Finding SNPs with Putative Phenotypic Effect at Transcriptional Level. - Lucía Conde; Juan M. Vaquerizas; Javier Santoyo; Fátima Al-Shahrour; Joaquín Dopazo (Spanish Bioinformatics Conference, 2004)

PupaSNP Finder: a web tool for finding SNPs with putative effect at transcriptional level. - Lucía Conde; Juan M. Vaquerizas; Javier Santoyo; Fátima Al-Shahrour; Sergio Ruiz-Llorente; Mercedes Robledo; Joaquín Dopazo (Nucleic Acids Res., 2004)

New challenges in gene expression data analysis and the extended GEPAS. - Javier Herrero; Juan M. Vaquerizas; Fátima Al-Shahrour; Lucía Conde; Álvaro Mateos; Javier Santoyo; Ramón Díaz-Uriarte; Joaquín Dopazo (Nucleic Acids Res., 2004)

BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments. - Fátima Al-Shahrour; Pablo Minguez; Juan M. Vaquerizas; Lucía Conde; Joaquín Dopazo (Nucleic Acids Res., 2005)

PupasView: a visual tool for selecting suitable SNPs, with putative pathological effect in genes, for genotyping purposes. - Lucía Conde; Juan M. Vaquerizas; Carles Ferrer-Costa; Xavier de la Cruz; Modesto Orozco; Joaquín Dopazo (Nucleic Acids Res., 2005)

GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data. - Juan M. Vaquerizas; Lucía Conde; Patricio Yankilevich; Amaya Cabezón; Pablo Minguez; Ramón Díaz-Uriarte; Fátima Al-Shahrour; Javier Herrero; Joaquín Dopazo (Nucleic Acids Res., 2005)

BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments. - Fátima Al-Shahrour; Pablo Minguez; Joaquín Tárraga; David Montaner; Eva Alloza; Juan M. Vaquerizas; Lucía Conde; Christian Blaschke; Javier Vera; Joaquín Dopazo (Nucleic Acids Res., 2006)

PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes. - Lucía Conde; Juan M. Vaquerizas; Hernán Dopazo; Leonardo Arbiza; Joke Reumers; Frederic Rousseau 001; Joost Schymkowitz; Joaquín Dopazo (Nucleic Acids Res., 2006)

Next station in microarray data analysis: GEPAS. - David Montaner; Joaquín Tárraga; Jaime Huerta-Cepas; Jordi Burguet-Castell; Juan M. Vaquerizas; Lucía Conde; Pablo Minguez; Javier Vera; Sach Mukherjee; Joan Valls; Miguel A. G. Pujana; Eva Alloza; et al. (Nucleic Acids Res., 2006)

ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling. - Lucía Conde; David Montaner; Jordi Burguet-Castell; Joaquín Tárraga; Ignacio Medina; Fátima Al-Shahrour; Joaquín Dopazo (Nucleic Acids Res., 2007)

Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases. - Joke Reumers; Lucía Conde; Ignacio Medina; Sebastian Maurer-Stroh; Joost J. J. van Durme; Joaquín Dopazo; Frederic Rousseau 001; Joost Schymkowitz (Nucleic Acids Res., 2008)

eALPS: Estimating Abundance Levels in Pooled Sequencing Using Available Genotyping Data. - Itamar Eskin; Farhad Hormozdiari; Lucía Conde; Jacques Riby; Christine F. Skibola; Eleazar Eskin; Eran Halperin (J. Comput. Biol., 2013)