BowTieBuilder: modeling signal transduction pathways. - Jochen Supper; Lucía Spangenberg; Hannes Planatscher; Andreas Dräger; Adrian Schröder; Andreas Zell (BMC Syst. Biol., 2009)

Identifying associations between amino acid changes and meta information in alignments. - Lucía Spangenberg; Florian Battke; Martí Graña; Kay Nieselt; Hugo Naya (Bioinform., 2011)

Evaluation of different approaches for missing data imputation on features associated to genomic data. - Ben Omega Petrazzini; Hugo Naya; Fernando Lopez-Bello; Gustavo E. Vazquez; Lucía Spangenberg (BioData Min., 2021)

Petri net modeling and simulation of post-transcriptional regulatory networks of human embryonic stem cell (hESC) differentiation to cardiomyocytes. - Aruana F. F. Hansel-Fröse; Christoph Brinkrolf; Marcel Friedrichs; Bruno Dallagiovanna; Lucía Spangenberg (J. Integr. Bioinform., 2025)