Learning Simplicial Complexes from Persistence Diagrams. - Robin Lynne Belton; Brittany Terese Fasy; Rostik Mertz; Samuel Micka; David L. Millman; Daniel Salinas; Anna Schenfisch; Jordan Schupbach; Lucia Williams (CCCG, 2018)

Challenges in Reconstructing Shapes from Euler Characteristic Curves. - Brittany Terese Fasy; Samuel Micka; David L. Millman; Anna Schenfisch; Lucia Williams (CoRR, 2018)

RNA Transcript Assembly Using Inexact Flows. - Lucia Williams; Gillian Reynolds; Brendan Mumey (BIBM, 2019)

Persistence Diagrams for Efficient Simplicial Complex Reconstruction. - Brittany Terese Fasy; Samuel Micka; David L. Millman; Anna Schenfisch; Lucia Williams (CoRR, 2019)

Extending Maximal Perfect Haplotype Blocks to the Realm of Pangenomics. - Lucia Williams; Brendan Mumey (AlCoB, 2020)

Reconstructing embedded graphs from persistence diagrams. - Robin Lynne Belton; Brittany Terese Fasy; Rostik Mertz; Samuel Micka; David L. Millman; Daniel Salinas; Anna Schenfisch; Jordan Schupbach; Lucia Williams (Comput. Geom., 2020)

Efficient Graph Reconstruction and Representation Using Augmented Persistence Diagrams. - Anna Schenfisch; Brittany Terese Fasy; Samuel Micka; David L. Millman; Lucia Williams (CCCG, 2022)

Fast, Flexible, and Exact Minimum Flow Decompositions via ILP. - Fernando H. C. Dias; Lucia Williams; Brendan Mumey; Alexandru I. Tomescu (RECOMB, 2022)

Safety and Completeness in Flow Decompositions for RNA Assembly. - Shahbaz Khan 004; Milla Kortelainen; Manuel Cáceres; Lucia Williams; Alexandru I. Tomescu (RECOMB, 2022)

Minimum Flow Decomposition in Graphs with Cycles using Integer Linear Programming. - Fernando H. C. Dias; Lucia Williams; Brendan Mumey; Alexandru I. Tomescu (CoRR, 2022)

Efficient Minimum Flow Decomposition via Integer Linear Programming. - Fernando H. C. Dias; Lucia Williams; Brendan Mumey; Alexandru I. Tomescu (J. Comput. Biol., 2022)

Improving RNA Assembly via Safety and Completeness in Flow Decompositions. - Shahbaz Khan 004; Milla Kortelainen; Manuel Cáceres; Lucia Williams; Alexandru I. Tomescu (J. Comput. Biol., 2022)

Flow Decomposition With Subpath Constraints. - Lucia Williams; Alexandru I. Tomescu; Brendan Mumey (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

A safety framework for flow decomposition problems via integer linear programming. - Fernando H. C. Dias; Manuel Cáceres; Lucia Williams; Brendan Mumey; Alexandru I. Tomescu (Bioinform., 2023)

Width Helps and Hinders Splitting Flows. - Manuel Cáceres; Massimo Cairo; Andreas Grigorjew; Shahbaz Khan 004; Brendan Mumey; Romeo Rizzi; Alexandru I. Tomescu; Lucia Williams (ACM Trans. Algorithms, 2024)