Antimony: a modular model definition language. - Lucian P. Smith; Frank T. Bergmann; Deepak Chandran; Herbert M. Sauro (Bioinform., 2009)

A Profile of Today's SBML-Compatible Software. - Michael Hucka; Frank T. Bergmann; Sarah M. Keating; Lucian P. Smith (e-Science Workshops, 2011)

SBML and CellML translation in Antimony and JSim. - Lucian P. Smith; Erik Butterworth; James B. Bassingthwaighte; Herbert M. Sauro (Bioinform., 2014)

A Reappraisal of How to Build Modular, Reusable Models of Biological Systems. - Maxwell Lewis Neal; Michael T. Cooling; Lucian P. Smith; Christopher T. Thompson; Herbert M. Sauro; Brian E. Carlson; Daniel L. Cook; John H. Gennari (PLoS Comput. Biol., 2014)

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions. - Michael Hucka; Frank T. Bergmann; Andreas Dräger; Stefan Hoops; Sarah M. Keating; Nicolas Le Novère; Chris J. Myers; Brett G. Olivier; Sven Sahle; James C. Schaff; Lucian P. Smith; Dagmar Waltemath; et al. (J. Integr. Bioinform., 2015)

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core. - Michael Hucka; Frank T. Bergmann; Stefan Hoops; Sarah M. Keating; Sven Sahle; James C. Schaff; Lucian P. Smith; Darren J. Wilkinson (J. Integr. Bioinform., 2015)

SBML Level 3 package: Hierarchical Model Composition, Version 1 Release 3. - Lucian Paul Smith; Michael Hucka; Stefan Hoops; Andrew Finney; Martin Ginkel; Chris J. Myers; Ion I. Moraru; Wolfram Liebermeister (J. Integr. Bioinform., 2015)

Sharing formats for disease models. - Lucian P. Smith; Maciej J. Swat; Jacob Barhak (SummerSim, 2016)

phraSED-ML: A paraphrased, human-readable adaptation of SED-ML. - Kiri Choi; Lucian P. Smith; J. Kyle Medley; Herbert M. Sauro (J. Bioinform. Comput. Biol., 2016)

SBML Level 3 package: Groups, Version 1 Release 1. - Michael Hucka; Lucian P. Smith (J. Integr. Bioinform., 2016)

Tellurium: An extensible python-based modeling environment for systems and synthetic biology. - Kiri Choi; J. Kyle Medley; Matthias König 003; Kaylene Stocking; Lucian P. Smith; Stanley Gu; Herbert M. Sauro (Biosyst., 2018)

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3). - Frank T. Bergmann; Jonathan Cooper; Matthias König 003; Ion I. Moraru; David P. Nickerson; Nicolas Le Novère; Brett G. Olivier; Sven Sahle; Lucian P. Smith; Dagmar Waltemath (J. Integr. Bioinform., 2018)

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core. - Michael Hucka; Frank T. Bergmann; Andreas Dräger; Stefan Hoops; Sarah M. Keating; Nicolas Le Novère; Chris J. Myers; Brett G. Olivier; Sven Sahle; James C. Schaff; Lucian P. Smith; Dagmar Waltemath; et al. (J. Integr. Bioinform., 2018)

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core. - Michael Hucka; Frank T. Bergmann; Andreas Dräger; Stefan Hoops; Sarah M. Keating; Nicolas Le Novère; Chris J. Myers; Brett G. Olivier; Sven Sahle; James C. Schaff; Lucian P. Smith; Dagmar Waltemath; et al. (J. Integr. Bioinform., 2018)

Tellurium notebooks - An environment for reproducible dynamical modeling in systems biology. - J. Kyle Medley; Kiri Choi; Matthias König 003; Lucian P. Smith; Stanley Gu; Joseph L. Hellerstein; Stuart C. Sealfon; Herbert M. Sauro (PLoS Comput. Biol., 2018)

CNValidator: validating somatic copy-number inference. - Lucian P. Smith; Jon A Yamato; Mary K. Kuhner (Bioinform., 2019)

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2. - Michael Hucka; Frank T. Bergmann; Claudine Chaouiya; Andreas Dräger; Stefan Hoops; Sarah M. Keating; Matthias König 003; Nicolas Le Novère; Chris J. Myers; Brett G. Olivier; Sven Sahle; James C. Schaff; et al. (J. Integr. Bioinform., 2019)

Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1. - Lucian P. Smith; Stuart L. Moodie; Frank T. Bergmann; Colin S. Gillespie; Sarah M. Keating; Matthias König 003; Chris J. Myers; Maciek J. Swat; Darren J. Wilkinson; Michael Hucka (J. Integr. Bioinform., 2020)

The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE). - Dagmar Waltemath; Martin Golebiewski; Michael L. Blinov; Padraig Gleeson; Henning Hermjakob; Michael Hucka; Esther Thea Inau; Sarah M. Keating; Matthias König 003; Olga Krebs; Rahuman S. Malik-Sheriff; David P. Nickerson; et al. (J. Integr. Bioinform., 2020)

Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2. - Fengkai Zhang; Lucian P. Smith; Michael L. Blinov; James R. Faeder; William S. Hlavacek; José Juan Tapia; Sarah M. Keating; Nicolas Rodriguez 001; Andreas Dräger; Leonard A. Harris; Andrew Finney; Bin Hu 025; et al. (J. Integr. Bioinform., 2020)

Publishing reproducible dynamic kinetic models. - Veronica Porubsky; Lucian P. Smith; Herbert M. Sauro (Briefings Bioinform., 2021)

The simulation experiment description markup language (SED-ML): language specification for level 1 version 4. - Lucian P. Smith; Frank T. Bergmann; Alan Garny; Tomás Helikar; Jonathan R. Karr; David P. Nickerson; Herbert M. Sauro; Dagmar Waltemath; Matthias König 003 (J. Integr. Bioinform., 2021)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (CoRR, 2022)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (Nucleic Acids Res., 2022)

libRoadRunner 2.0: a high performance SBML simulation and analysis library. - Ciaran M. Welsh; Jin Xu; Lucian P. Smith; Matthias König 003; Kiri Choi; Herbert M. Sauro (Bioinform., 2023)

SBML level 3 package: spatial processes, version 1, release 1. - James C. Schaff; Anuradha Lakshminarayana; Robert F. Murphy; Frank T. Bergmann; Akira Funahashi; Devin P. Sullivan; Lucian P. Smith (J. Integr. Bioinform., 2023)

VSCode-Antimony: a source editor for building, analyzing, and translating antimony models. - Steve Ma; Longxuan Fan; Sai Anish Konanki; Eva Liu; John H. Gennari; Lucian P. Smith; Joseph L. Hellerstein; Herbert M. Sauro (Bioinform., 2023)

MakeSBML: a tool for converting between Antimony and SBML. - Bartholomew E. Jardine; Lucian P. Smith; Herbert M. Sauro (J. Integr. Bioinform., 2024)

The simulation experiment description markup language (SED-ML): language specification for level 1 version 5. - Lucian P. Smith; Frank T. Bergmann; Alan Garny; Tomás Helikar; Jonathan R. Karr; David P. Nickerson; Herbert M. Sauro; Dagmar Waltemath; Matthias König 003 (J. Integr. Bioinform., 2024)