Proteingo: Motivation, user experience, and learning of molecular interactions in biological complexes. - Marcos Felipe Martins Silva; Pedro M. Martins 001; Diego C. B. Mariano; Lucianna Helene Santos; Isabela Pastorini; Naiara Pantuza; Cristiane Neri Nobre; Raquel Cardoso de Melo Minardi (Entertain. Comput., 2019)

Understanding Structure-Activity Relationships for Trypanosomal Cysteine Protease Inhibitors by Simulations and Free Energy Calculations. - Lucianna Helene Santos; Birgit J. Waldner; Julian E. Fuchs; Glaécia A. N. Pereira; Klaus R. Liedl; Ernesto Raúl Caffarena; Rafaela Salgado Ferreira (J. Chem. Inf. Model., 2019)

A Brief History of Bioinformatics Told by Data Visualization. - Diego C. B. Mariano; Mívian M. Ferreira; Bruno Luan de Sousa; Lucianna Helene Santos; Raquel Cardoso de Melo Minardi (BSB, 2020)

Proteus: An algorithm for proposing stabilizing mutation pairs based on interactions observed in known protein 3D structures. - José Renato M. S. Barroso; Diego C. B. Mariano; Sandro R. Dias; Rafael E. O. Rocha; Lucianna Helene Santos; Ronaldo Alves Pinto Nagem; Raquel Cardoso de Melo Minardi (BMC Bioinform., 2020)

nAPOLI: A Graph-Based Strategy to Detect and Visualize Conserved Protein-Ligand Interactions in Large-Scale. - Alexandre V. Fassio; Lucianna Helene Santos; Sabrina de Azevedo Silveira; Rafaela Salgado Ferreira; Raquel Cardoso de Melo Minardi (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Propedia: a database for protein-peptide identification based on a hybrid clustering algorithm. - Pedro M. Martins 001; Lucianna Helene Santos; Diego C. B. Mariano; Felippe C. Queiroz; Luana L. Bastos; Isabela de Souza Gomes; Pedro H. C. Fischer; Rafael E. O. Rocha; Sabrina de Azevedo Silveira; Leonardo H. F. de Lima; Mariana T. Q. de Magalhães; Maria G. A. Oliveira; et al. (BMC Bioinform., 2021)

Structure-Based Identification of Naphthoquinones and Derivatives as Novel Inhibitors of Main Protease Mpro and Papain-like Protease PLpro of SARS-CoV-2. - Lucianna Helene Santos; Thales Kronenberger; Renata G. Almeida; Elany B. Silva; Rafael E. O. Rocha; Joyce C. Oliveira; Luiza V. Barreto; Danielle Skinner; Pavla Fajtová; Miriam A. Giardini; Brendon Woodworth; Conner Bardine; et al. (J. Chem. Inf. Model., 2022)

Characterization of an Allosteric Pocket in Zika Virus NS2B-NS3 Protease. - Naiá Porã Santos; Lucianna Helene Santos; Mariana Torquato Quezado de Magalhães; Jian Lei; Rolf Hilgenfeld; Rafaela Salgado Ferreira; Lucas Bleicher (J. Chem. Inf. Model., 2022)

Editorial: Bioinformatics in the age of data science: algorithms, methods, and tools applied from Omics to structural data. - Diego C. B. Mariano; Néli José da Fonseca Jr.; Lucianna Helene Santos; Raquel Cardoso de Melo Minardi (Frontiers Bioinform., 2023)