Modelling the magnetic signature of neuronal tissue. - K. B. Blagoev; Bogdan Mihaila; B. J. Travis; Ludmil B. Alexandrov; Alan R. Bishop; Douglas M. Ranken; Stefan Posse; Charles Gasparovic; Andy R. Mayer; Cheryl J. Aine; István Ulbert; M. Morita; et al. (NeuroImage, 2007)

Binding of Nucleoid-Associated Protein Fis to DNA Is Regulated by DNA Breathing Dynamics. - Kristy Nowak-Lovato; Ludmil B. Alexandrov; Afsheen Banisadr; Amy L. Bauer; Alan R. Bishop; Anny Usheva; Fangping Mu; Elizabeth Hong-Geller; Kim Ø. Rasmussen; William S. Hlavacek; Boian S. Alexandrov (PLoS Comput. Biol., 2013)

Fast randomization of large genomic datasets while preserving alteration counts. - Andrea Gobbi; Francesco Iorio; Kevin J. Dawson; David C. Wedge; David Tamborero; Ludmil B. Alexandrov; Núria López-Bigas; Mathew Garnett; Giuseppe Jurman; Julio Saez-Rodriguez (Bioinform., 2014)

The role of structural parameters in DNA cyclization. - Ludmil B. Alexandrov; Alan R. Bishop; Kim Ø. Rasmussen; Boian S. Alexandrov (BMC Bioinform., 2016)

Nonnegative/binary matrix factorization with a D-Wave quantum annealer. - Daniel O'Malley; Velimir V. Vesselinov; Boian S. Alexandrov; Ludmil B. Alexandrov (CoRR, 2017)

Pan-cancer genome and transcriptome analyses of 1, 699 paediatric leukaemias and solid tumours. - Xiaotu Ma; Yu Liu; Yanling Liu; Ludmil B. Alexandrov; Michael N. Edmonson; Charles Gawad; Xin Zhou; Yongjin Li; Michael Rusch; John Easton; Robert Huether; Veronica Gonzalez-Pena; et al. (Nat., 2018)

Generating realistic null hypothesis of cancer mutational landscapes using SigProfilerSimulator. - Erik N. Bergstrom; Mark Barnes; Iñigo Martincorena; Ludmil B. Alexandrov (BMC Bioinform., 2020)

Examining clustered somatic mutations with SigProfilerClusters. - Erik N. Bergstrom; Mousumy Kundu; Noura Tbeileh; Ludmil B. Alexandrov (Bioinform., 2022)

Assigning mutational signatures to individual samples and individual somatic mutations with SigProfilerAssignment. - Marcos Díaz-Gay; Raviteja Vangara; Mark Barnes; Xi Wang; S. M. Ashiqul Islam; Ian Vermes; Stephen Duke; Nithish Bharadhwaj Narasimman; Ting Yang; Zichen Jiang; Sarah J. Moody; Sergey Senkin; et al. (Bioinform., 2023)