An algorithm for identification of regulatory signals in unaligned DNA sequences, its testing and parallel implementation. - Ludmila V. Danilova; Vassily A. Lyubetsky; Mikhail S. Gelfand (Silico Biol., 2003)

Rnakinetics: a Web Server that Models Secondary Structure Kinetics of an Elongating RNA. - Ludmila V. Danilova; Dmitri D. Pervouchine; Alexander V. Favorov; Andrey A. Mironov (J. Bioinform. Comput. Biol., 2006)

Cancer Systems Biology. - Elana J. Fertig; Ludmila V. Danilova; Michael F. Ochs (Handbook of Statistical Bioinformatics, 2011)

A multi-omic analysis of human naïve CD4+ T cells. - Christopher J. Mitchell; Derese Getnet; Min Sik Kim; Srinivas Manda Srikanth; Praveen Kumar; Tai-Chung Huang; Sneha M. Pinto; Nirujogi Raja Sekhar; Mio Iwasaki; Patrick G. Shaw; Xinyan Wu; Jun Zhong; et al. (BMC Syst. Biol., 2015)