vSDC: a method to improve early recognition in virtual screening when limited experimental resources are available. - Ludovic Chaput; Juan Martinez-Sanz; Eric Quiniou; Pascal Rigolet; Nicolas Saettel; Liliane Mouawad (J. Cheminformatics, 2016)

Benchmark of four popular virtual screening programs: construction of the active/decoy dataset remains a major determinant of measured performance. - Ludovic Chaput; Juan Martinez-Sanz; Nicolas Saettel; Liliane Mouawad (J. Cheminformatics, 2016)

Efficient conformational sampling and weak scoring in docking programs? Strategy of the wisdom of crowds. - Ludovic Chaput; Liliane Mouawad (J. Cheminformatics, 2017)

Blinded evaluation of cathepsin S inhibitors from the D3RGC3 dataset using molecular docking and free energy calculations. - Ludovic Chaput; Edithe Selwa; Eddy Elisée; Bogdan I. Iorga (J. Comput. Aided Mol. Des., 2019)

Performance evaluation of molecular docking and free energy calculations protocols using the D3R Grand Challenge 4 dataset. - Eddy Elisée; Vytautas Gapsys; Nawel Mele; Ludovic Chaput; Edithe Selwa; Bert L. de Groot; Bogdan I. Iorga (J. Comput. Aided Mol. Des., 2019)

FastTargetPred: a program enabling the fast prediction of putative protein targets for input chemical databases. - Ludovic Chaput; Valentin Guillaume; Natesh Singh; Benoit Deprez; Bruno O. Villoutreix (Bioinform., 2020)

Fast Rescoring Protocols to Improve the Performance of Structure-Based Virtual Screening Performed on Protein-Protein Interfaces. - Natesh Singh; Ludovic Chaput; Bruno O. Villoutreix (J. Chem. Inf. Model., 2020)

Virtual screening web servers: designing chemical probes and drug candidates in the cyberspace. - Natesh Singh; Ludovic Chaput; Bruno O. Villoutreix (Briefings Bioinform., 2021)