mapDamage: testing for damage patterns in ancient DNA sequences. - Aurelien Ginolhac; Morten Rasmussen; M. Thomas P. Gilbert; Eske Willerslev; Ludovic Orlando (Bioinform., 2011)

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters. - Hákon Jónsson; Aurelien Ginolhac; Mikkel Schubert; Philip L. F. Johnson; Ludovic Orlando (Bioinform., 2013)

Accurate continuous geographic assignment from low- to high-density SNP data. - Gilles Guillot; Hákon Jónsson; Antoine Hinge; Nabil Manchih; Ludovic Orlando (Bioinform., 2016)

gargammel: a sequence simulator for ancient DNA. - Gabriel Renaud; Kristian Hanghøj; Eske Willerslev; Ludovic Orlando (Bioinform., 2017)

Struct-f4: a Rcpp package for ancestry profile and population structure inference from f4-statistics. - Pablo Librado; Ludovic Orlando (Bioinform., 2022)

mapDATAge: a ShinyR package to chart ancient DNA data through space and time. - Xuexue Liu; Ludovic Orlando (Bioinform., 2022)