MutateX: an automated pipeline for in silico saturation mutagenesis of protein structures and structural ensembles. - Matteo Tiberti; Thilde Terkelsen; Kristine Degn; Ludovica Beltrame; Tycho Canter Cremers; Isabelle da Piedade; Miriam Di Marco; Emiliano Maiani; Elena Papaleo (Briefings Bioinform., 2022)

PyInteraph2 and PyInKnife2 to Analyze Networks in Protein Structural Ensembles. - Valentina Sora; Matteo Tiberti; Ludovica Beltrame; Deniz Dogan; Shahriyar Mahdi Robbani; Joshua Rubin; Elena Papaleo (J. Chem. Inf. Model., 2023)

PDBminer to Find and Annotate Protein Structures for Computational Analysis. - Kristine Degn; Ludovica Beltrame; Matteo Tiberti; Elena Papaleo (J. Chem. Inf. Model., 2023)