The SysteMHC Atlas project. - Wenguang Shao; Patrick G. A. Pedrioli; Witold Wolski; Christian Scurtescu; Emanuel Schmid; Juan Antonio Vizcaíno; Mathieu Courcelles; Heiko Schuster; Daniel Kowalewski; Fabio Marino; Cecilia S. Lindestam Arlehamn; Kerrie Vaughan; et al. (Nucleic Acids Res., 2018)

The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires. - Milena Pavlovic; Lonneke Scheffer; Keshav Motwani; Chakravarthi Kanduri; Radmila Kompova; Nikolay Vazov; Knut Waagan; Fabian L. M. Bernal; Alexandre Almeida Costa; Brian Corrie; Rahmad Akbar; Ghadi S. Al Hajj; et al. (Nat. Mach. Intell., 2021)

TCRpower: quantifying the detection power of T-cell receptor sequencing with a novel computational pipeline calibrated by spike-in sequences. - Shiva Dahal-Koirala; Gabriel Balaban; Ralf Stefan Neumann; Lonneke Scheffer; Knut Erik Aslaksen Lundin; Victor Greiff; Ludvig Magne Sollid; Shuo-Wang Qiao; Geir Kjetil Sandve (Briefings Bioinform., 2022)

Improving generalization of machine learning-identified biomarkers with causal modeling: an investigation into immune receptor diagnostics. - Milena Pavlovic; Ghadi S. Al Hajj; Johan Pensar; Mollie Wood; Ludvig Magne Sollid; Victor Greiff; Geir Kjetil Sandve (CoRR, 2022)

Improving generalization of machine learning-identified biomarkers using causal modelling with examples from immune receptor diagnostics. - Milena Pavlovic; Ghadi S. Al Hajj; Chakravarthi Kanduri; Johan Pensar; Mollie Wood; Ludvig Magne Sollid; Victor Greiff; Geir Kjetil Sandve (Nat. Mac. Intell., 2024)