Contextual Genetic Algorithms: Evolving Developmental Rules. - Luis Mateus Rocha (ECAL, 1995)

Towards a Formal Taxonomy of Hybrid Uncertainty Representations. - Cliff A. Joslyn; Luis Mateus Rocha (Inf. Sci., 1998)

Mining Associative Relations from Website Logs and their Application to Context-Dependent Retrieval Using Spreading Activation. - Johan Bollen; Herbert Van de Sompel; Luis Mateus Rocha (WOWS, 1999)

TalkMine and the Adaptive Recommendation Project. - Luis Mateus Rocha (ACM DL, 1999)

An Adaptive Systems Approach to the Implementation and Evaluation of Digital Library Recommendation Systems. - Johan Bollen; Luis M. Rocha (ECDL, 2000)

Syntactic Autonomy: Why There is no Autonomy without Symbols and How Self-Organization Might Evolve Them - Luis M. Rocha (CoRR, 2000)

Biologically Motivated Distributed Designs for Adaptive Knowledge Management - Luis M. Rocha; Johan Bollen (CoRR, 2000)

Combination of evidence in recommendation systems characterized by distance functions. - Luis M. Rocha (FUZZ-IEEE, 2002)

Exploration of RNA editing and design of robust genetic algorithms. - Chien-Feng Huang; Luis M. Rocha (IEEE Congress on Evolutionary Computation, 2003)

Semi-metric Behavior in Document Networks and its Application to Recommendation Systems - Luis M. Rocha (CoRR, 2003)

A Systematic Study of Genetic Algorithms with Genotype Editing. - Chien-Feng Huang; Luis M. Rocha (GECCO (1), 2004)

Optimization Algorithm for Dynamic Multi-Agent Job Routing. - Leonid Sheremetov; Luis M. Rocha; Juan Guerra; Jorge Martínez Muñoz (BASYS, 2004)

Using the APRI model for evaluating the intention in collaborative learning environments. - César A. Osuna-Gómez; Luis M. Rocha; Manuel Romero Salcedo; Luis Villa-Vargas; Leonid Sheremetov; Olivia Niño (Inteligencia Artif., 2004)

Study and analysis of workspace awareness in CDebate: a groupware application for collaborative debates. - Manuel Romero Salcedo; César A. Osuna-Gómez; Leonid Sheremetov; Luis Villa-Vargas; Carlos Morales; Luis M. Rocha; Manuel Chi (Interact. Comput., 2004)

Tracking extrema in dynamic environments using a coevolutionary agent-based model of genotype edition. - Chien-Feng Huang; Luis M. Rocha (GECCO, 2005)

MyLibrary@LANL: Proximity and Semi-metric Networks for a Collaborative and Recommender Web Service. - Luis M. Rocha; Tiago Simas; Andreas Rechtsteiner; Mariella Di Giacomo; Richard Luce (Web Intelligence, 2005)

Introduction to the Special Issue: Embodied and Situated Cognition. - Fernando Almeida e Costa; Luis Mateus Rocha (Artif. Life, 2005)

Material Representations: From the Genetic Code to the Evolution of Cellular Automata. - Luis Mateus Rocha; Wim Hordijk (Artif. Life, 2005)

Protein annotation as term categorization in the gene ontology using word proximity networks. - Karin Verspoor; Judith D. Cohn; Cliff A. Joslyn; Susan M. Mniszewski; Andreas Rechtsteiner; Luis M. Rocha; Tiago Simas (BMC Bioinform., 2005)

Large-Scale Testing of Bibliome Informatics Using Pfam Protein Families. - Ana Gabriela Maguitman; Andreas Rechtsteiner; Karin Verspoor; Charlie E. M. Strauss; Luis M. Rocha (Pacific Symposium on Biocomputing, 2006)

Genotype Editing and the Evolution of Regulation and Memory. - Luis M. Rocha; Jasleen Kaur 002 (ECAL, 2007)

Agent-Based Model of Genotype Editing. - Chien-Feng Huang; Jasleen Kaur 002; Ana Gabriela Maguitman; Luis M. Rocha (Evol. Comput., 2007)

Adaptive Spam Detection Inspired by the Immune System. - Alaa Abi-Haidar; Luis M. Rocha (ALIFE, 2008)

Conceptual Structure in Cellular Automata - The Density Classification Task. - Manuel Marques-Pita; Luis M. Rocha (ALIFE, 2008)

Adaptive Spam Detection Inspired by a Cross-Regulation Model of Immune Dynamics: A Study of Concept Drift. - Alaa Abi-Haidar; Luis M. Rocha (ICARIS, 2008)

The Role of Conceptual Structure in Designing Cellular Automata to Perform Collective Computation. - Manuel Marques-Pita; Melanie Mitchell; Luis M. Rocha (UC, 2008)

Uncovering protein interaction in abstracts and text using a novel linear model and word proximity networks - Alaa Abi-Haidar; Jasleen Kaur 002; Ana Gabriela Maguitman; Predrag Radivojac; Andreas Rechtsteiner; Karin Verspoor; Zhiping Wang; Luis M. Rocha (CoRR, 2008)

Biomedical Text Mining Applied to Document Retrieval and Semantic Indexing. - Anália Lourenço; Sónia Carneiro; Eugénio C. Ferreira; Rafael Carreira; Luis M. Rocha; Daniel Glez-Peña; José Ramón Méndez 001; Florentino Fdez-Riverola; Fernando Díaz 001; Isabel Rocha; Miguel Rocha 001 (IWANN (2), 2009)

Literature mining on pharmacokinetics numerical data: A feasibility study. - Zhiping Wang; Seongho Kim; Sara K. Quinney; Yingying Guo; Stephen D. Hall; Luis M. Rocha; Lang Li 001 (J. Biomed. Informatics, 2009)

Collective Classification of Biomedical Articles using T-Cell Cross-regulation. - Alaa Abi-Haidar; Luis M. Rocha (ALIFE, 2010)

Biomedical Article Classification Using an Agent-Based Model of T-Cell Cross-Regulation. - Alaa Abi-Haidar; Luis Mateus Rocha (ICARIS, 2010)

BioDR: Semantic indexing networks for biomedical document retrieval. - Anália Lourenço; Rafael Carreira; Daniel Glez-Peña; José Ramón Méndez 001; Sónia Carneiro; Luis Mateus Rocha; Fernando Díaz 001; Eugénio C. Ferreira; Isabel Rocha; Florentino Fdez-Riverola; Miguel Rocha 001 (Expert Syst. Appl., 2010)

Classification of Protein-Protein Interaction Full-Text Documents Using Text and Citation Network Features. - Artemy Kolchinsky; Alaa Abi-Haidar; Jasleen Kaur 002; Ahmed Abdeen Hamed; Luis Mateus Rocha (IEEE ACM Trans. Comput. Biol. Bioinform., 2010)

Prediction and modularity in dynamical systems. - Artemy Kolchinsky; Luis M. Rocha (ECAL, 2011)

Schema redescription in cellular automata: Revisiting emergence in complex systems. - Manuel Marques-Pita; Luis M. Rocha (ALIFE, 2011)

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. - Martin Krallinger; Miguel Vazquez; Florian Leitner; David Salgado; Andrew Chatr-aryamontri; Andrew G. Winter; Livia Perfetto; Leonardo Briganti; Luana Licata; Marta Iannuccelli; Luisa Castagnoli; Gianni Cesareni; et al. (BMC Bioinform., 2011)

A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature. - Anália Lourenço; Michael D. Conover; Andrew Wong; Azadeh Nematzadeh; Fengxia Pan; Hagit Shatkay; Luis M. Rocha (BMC Bioinform., 2011)

Collective classification of textual documents by guided self-organization in T-Cell cross-regulation dynamics. - Alaa Abi-Haidar; Luis M. Rocha (Evol. Intell., 2011)

Semi-metric Networks for Recommender Systems. - Tiago Simas; Luis M. Rocha (Web Intelligence/IAT Workshops, 2012)

Correction: A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature. - Anália Lourenço; Michael D. Conover; Andrew Wong; Azadeh Nematzadeh; Fengxia Pan; Hagit Shatkay; Luis M. Rocha (BMC Bioinform., 2012)

Evaluation of Linear Classifiers on Articles Containing Pharmacokinetic Evidence of Drug-Drug Interactions. - Artemy Kolchinsky; Anália Lourenço; Lang Li 001; Luis M. Rocha (Pacific Symposium on Biocomputing, 2013)

An integrated pharmacokinetics ontology and corpus for text mining. - Heng-Yi Wu; Shreyas D. Karnik; Abhinita Subhadarshini; Zhiping Wang; Santosh Philips; Xu Han; Chienwei Chiang; Lei Liu; Malaz Boustani; Luis M. Rocha; Sara K. Quinney; David A. Flockhart; et al. (BMC Bioinform., 2013)

Canalization and control in automata networks: body segmentation in Drosophila melanogaster - Manuel Marques-Pita; Luis M. Rocha (CoRR, 2013)

Designing a Minimalist Socially Aware Robotic Agent for the Home. - Matthew R. Francisco; Ian B. Wood; Selma Sabanovic; Luis M. Rocha (ALIFE, 2014)

Structure and Dynamics Affect the Controlability of Complex Systems: A Preliminary Study. - Alexander J. Gates; Luis M. Rocha (ALIFE, 2014)

Extraction of Pharmacokinetic Evidence of Drug-drug Interactions from the Literature. - Artemy Kolchinsky; Anália Lourenço; Heng-Yi Wu; Lang Li 001; Luis M. Rocha (CoRR, 2014)

Multi-scale integration and predictability in resting state brain activity. - Artemy Kolchinsky; Martijn P. van den Heuvel; Alessandra Griffa; Patric Hagmann; Luis M. Rocha; Olaf Sporns; Joaquín Goñi (Frontiers Neuroinformatics, 2014)

Computational fact checking from knowledge networks. - Giovanni Luca Ciampaglia; Prashant Shiralkar; Luis M. Rocha; Johan Bollen; Filippo Menczer; Alessandro Flammini (CoRR, 2015)

Control of complex networks requires both structure and dynamics. - Alexander J. Gates; Luis M. Rocha (CoRR, 2015)

Modularity and the Spread of Perturbations in Complex Dynamical Systems. - Artemy Kolchinsky; Alexander J. Gates; Luis M. Rocha (CoRR, 2015)

Distance closures on complex networks. - Tiago Simas; Luis M. Rocha (Netw. Sci., 2015)

Monitoring Potential Drug Interactions and Reactions via Network Analysis of Instagram User Timelines. - Rion Brattig Correia; Lang Li 001; Luis M. Rocha (PSB, 2016)

Human Sexual Cycles are Driven by Culture and Match Collective Moods. - Ian B. Wood; Pedro Leal Varela; Johan Bollen; Luis M. Rocha; Joana Gonçalves-Sá (CoRR, 2017)

City-wide Analysis of Electronic Health Records Reveals Gender and Age Biases in the Administration of Known Drug-Drug Interactions. - Rion Brattig Correia; Luciana Pereira de Araújo; Mauro Marcelo Mattos; Luis M. Rocha (CoRR, 2018)

CANA: A python package for quantifying control and canalization in Boolean Networks. - Rion Brattig Correia; Alexander J. Gates; Xuan Wang; Luis M. Rocha (CoRR, 2018)

City-wide electronic health records reveal gender and age biases in administration of known drug-drug interactions. - Rion Brattig Correia; Luciana P. de Araújo Kohler; Mauro Marcelo Mattos; Luis M. Rocha (npj Digit. Medicine, 2019)

Mining social media data for biomedical signals and health-related behavior. - Rion Brattig Correia; Ian B. Wood; Johan Bollen; Luis M. Rocha (CoRR, 2020)

Introduction to the special issue on COMPLEX NETWORKS 2018. - Hocine Cherifi; Luis M. Rocha; Stanley Wasserman (Netw. Sci., 2020)

The distance backbone of complex networks. - Tiago Simas; Rion Brattig Correia; Luis M. Rocha (J. Complex Networks, 2021)

Just In Time: Challenges and Opportunities of First Aid Care Information Sharing for Supporting Epileptic Seizure Response. - Aehong Min; Wendy Miller; Luis M. Rocha; Katy Börner; Rion Brattig Correia; Patrick C. Shih (Proc. ACM Hum. Comput. Interact., 2021)

Introduction to the special issue on COMPLEX NETWORKS 2019. - Hocine Cherifi; Luis M. Rocha (Netw. Sci., 2021)

The Distance Backbone of Directed Networks. - Felipe Xavier Costa; Rion Brattig Correia; Luis M. Rocha (COMPLEX NETWORKS (2), 2022)

Translational drug-interaction corpus. - Shijun Zhang; Heng-Yi Wu; Lei Wang 169; Gongbo Zhang; Luis M. Rocha; Hagit Shatkay; Lang Li 001 (Database J. Biol. Databases Curation, 2022)

On the feasibility of dynamical analysis of network models of biochemical regulation. - Luis M. Rocha (Bioinform., 2022)

Small Cohort of Epilepsy Patients Showed Increased Activity on Facebook before Sudden Unexpected Death. - Ian B. Wood; Rion Brattig Correia; Wendy R. Miller; Luis M. Rocha (CoRR, 2022)

Understanding Contexts and Challenges of Information Management for Epilepsy Care. - Aehong Min; Wendy R. Miller; Luis M. Rocha; Katy Börner; Rion Brattig Correia; Patrick C. Shih (CHI, 2023)

Dynamical Modularity in Automata Models of Biochemical Networks. - Thomas Parmer; Luis M. Rocha (CoRR, 2023)

Semi-metric topology characterizes epidemic spreading on complex networks. - David Soriano Paños; Felipe Xavier Costa; Luis M. Rocha (CoRR, 2023)

Effective Connectivity and Bias Entropy Improve Prediction of Dynamical Regime in Automata Networks. - Felipe Xavier Costa; Jordan C. Rozum; Austin M. Marcus; Luis M. Rocha (Entropy, 2023)

Contact networks have small metric backbones that maintain community structure and are primary transmission subgraphs. - Rion Brattig Correia; Alain Barrat; Luis M. Rocha (PLoS Comput. Biol., 2023)

The ultrametric backbone is the union of all minimum spanning forests. - Jordan C. Rozum; Luis M. Rocha (CoRR, 2024)

myAURA: Personalized health library for epilepsy management via knowledge graph sparsification and visualization. - Rion Brattig Correia; Jordan C. Rozum; Leonard E. Cross; Jack Felag; Michael Gallant; Ziqi Guo; Bruce William Herr II; Aehong Min; Deborah Stungis Rocha; Xuan Wang; Katy Börner; Wendy Miller; et al. (CoRR, 2024)

Selecting focused digital cohorts from social media using the metric backbone of biomedical knowledge graphs. - Ziqi Guo; Jack Felag; Jordan C. Rozum; Rion Brattig Correia; Luis M. Rocha (CoRR, 2024)

Refinement of an Epilepsy Dictionary through Human Annotation of Health-related posts on Instagram. - Aehong Min; Xuan Wang; Rion Brattig Correia; Jordan C. Rozum; Wendy R. Miller; Luis M. Rocha (CoRR, 2024)

Focused digital cohort selection from social media using the metric backbone of biomedical knowledge graphs. - Ziqi Guo; Jack Felag; Jordan C. Rozum; Rion Brattig Correia; Xuan Wang; Luis M. Rocha (J. Biomed. Informatics, 2025)

Challenges and opportunities for digital twins in precision medicine from a complex systems perspective. - Manlio De Domenico; Luca Allegri; Guido Caldarelli; Valeria d'Andrea; Barbara Di Camillo; Luis M. Rocha; Jordan C. Rozum; Riccardo Sbarbati; Francesco Zambelli (npj Digit. Medicine, 2025)