RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation. - Socorro Gama-Castro; Verónica Jiménez-Jacinto; Martín Peralta-Gil; Alberto Santos-Zavaleta; Mónica I. Peñaloza-Spínola; Bruno Contreras-Moreira; Juan Segura-Salazar; Luis Muñiz-Rascado; Irma Martínez-Flores; Heladia Salgado; César Bonavides-Martínez; Cei Abreu-Goodger; et al. (Nucleic Acids Res., 2008)

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units). - Socorro Gama-Castro; Heladia Salgado; Martín Peralta-Gil; Alberto Santos-Zavaleta; Luis Muñiz-Rascado; Hilda Solano-Lira; Verónica Jiménez-Jacinto; Verena Weiss; Jair S. García-Sotelo; Alejandra López-Fuentes; Liliana Porrón-Sotelo; Shirley Alquicira-Hernández; et al. (Nucleic Acids Res., 2011)

EcoCyc: a comprehensive database of Escherichia coli biology. - Ingrid M. Keseler; Julio Collado-Vides; Alberto Santos-Zavaleta; Martín Peralta-Gil; Socorro Gama-Castro; Luis Muñiz-Rascado; César Bonavides-Martínez; Suzanne M. Paley; Markus Krummenacker; Tomer Altman; Pallavi Kaipa; Aaron Spaulding; et al. (Nucleic Acids Res., 2011)

EcoCyc: fusing model organism databases with systems biology. - Ingrid M. Keseler; Amanda Mackie; Martín Peralta-Gil; Alberto Santos-Zavaleta; Socorro Gama-Castro; César Bonavides-Martínez; Carol A. Fulcher; Araceli M. Huerta; Anamika Kothari; Markus Krummenacker; Mario Latendresse; Luis Muñiz-Rascado; et al. (Nucleic Acids Res., 2013)

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. - Heladia Salgado; Martín Peralta-Gil; Socorro Gama-Castro; Alberto Santos-Zavaleta; Luis Muñiz-Rascado; Jair S. García-Sotelo; Verena Weiss; Hilda Solano-Lira; Irma Martínez-Flores; Alejandra Medina-Rivera; Gerardo Salgado-Osorio; Shirley Alquicira-Hernández; et al. (Nucleic Acids Res., 2013)

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond. - Socorro Gama-Castro; Heladia Salgado; Alberto Santos-Zavaleta; Daniela Ledezma-Tejeida; Luis Muñiz-Rascado; Jair Santiago García-Sotelo; Kevin Alquicira-Hernández; Irma Martínez-Flores; Lucia Pannier; Jaime Abraham Castro-Mondragón; Alejandra Medina-Rivera; Hilda Solano-Lira; et al. (Nucleic Acids Res., 2016)

First steps in automatic summarization of transcription factor properties for RegulonDB: classification of sentences about structural domains and regulated processes. - Carlos-Francisco Méndez-Cruz; Socorro Gama-Castro; Citlalli Mejía-Almonte; Marco-Polo Castillo-Villalba; Luis Muñiz-Rascado; Julio Collado-Vides (Database J. Biol. Databases Curation, 2017)

Strategies towards digital and semi-automated curation in RegulonDB. - Fabio Rinaldi 001; Oscar Lithgow-Serrano; Socorro Gama-Castro; Hilda Solano-Lira; Alejandra López-Fuentes; Luis Muñiz-Rascado; Cecilia Ishida-Gutiérrez; Carlos-Francisco Méndez-Cruz; Julio Collado-Vides (Database J. Biol. Databases Curation, 2017)

Erratum: Strategies towards digital and semi-automated curation in RegulonDB. - Fabio Rinaldi 001; Oscar Lithgow-Serrano; Socorro Gama-Castro; Hilda Solano-Lira; Alejandra López-Fuentes; Luis Muñiz-Rascado; Cecilia Ishida-Gutiérrez; Carlos-Francisco Méndez-Cruz; Julio Collado-Vides (Database J. Biol. Databases Curation, 2017)

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12. - Ingrid M. Keseler; Amanda Mackie; Alberto Santos-Zavaleta; Richard Billington; César Bonavides-Martínez; Ron Caspi; Carol A. Fulcher; Socorro Gama-Castro; Anamika Kothari; Markus Krummenacker; Mario Latendresse; Luis Muñiz-Rascado; et al. (Nucleic Acids Res., 2017)

RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12. - Alberto Santos-Zavaleta; Heladia Salgado; Socorro Gama-Castro; Mishael Sánchez-Pérez; Laura Gómez-Romero; Daniela Ledezma-Tejeida; Jair Santiago García-Sotelo; Kevin Alquicira-Hernández; Luis Muñiz-Rascado; Pablo Peña-Loredo; Cecilia Ishida-Gutiérrez; David A. Velázquez-Ramírez; et al. (Nucleic Acids Res., 2019)