A new efficient approach to fit stochastic models on the basis of high-throughput experimental data using a model of IRF7 gene expression as case study. - Luis U. Aguilera; Christoph Zimmer; Ursula Kummer (BMC Syst. Biol., 2017)

Computational design and interpretation of single-RNA translation experiments. - Luis U. Aguilera; William Raymond; Zachary R. Fox; Michael May; Elliot Djokic; Tatsuya Morisaki; Timothy J. Stasevich; Brian Munsky (PLoS Comput. Biol., 2019)

Stochastic dynamics of Type-I interferon responses. - Benjamin D. Maier; Luis U. Aguilera; Sven Sahle; Pascal Mutz; Priyata Kalra; Christopher Dächert; Ralf Bartenschlager; Marco Binder; Ursula Kummer (PLoS Comput. Biol., 2022)

Ten simple rules for managing laboratory information. - Casey-Tyler Berezin; Luis U. Aguilera; Sonja Billerbeck; Philip E. Bourne; Douglas Densmore; Paul S. Freemont; Thomas E. Gorochowski; Sarah I. Hernandez; Nathan J. Hillson; Connor R. King; Michael Köpke; Shuyi Ma; et al. (PLoS Comput. Biol., 2023)

Sequential design of single-cell experiments to identify discrete stochastic models for gene expression. - Joshua Cook; Eric Ron; Dmitri Svetlov; Luis U. Aguilera; Brian Munsky (CDC, 2024)