Social Structure and the Maintenance of Biodiversity. - Brian D. Connelly; Luis Zaman; Charles Ofria; Philip K. McKinley (ALIFE, 2010)

Modeling the evolutionary dynamics of plasmids in spatial populations. - Brian D. Connelly; Luis Zaman; Philip K. McKinley; Charles Ofria (GECCO, 2011)

Rapid host-parasite coevolution drives the production and maintenance of diversity in digital organisms. - Luis Zaman; Suhas Devangam; Charles Ofria (GECCO, 2011)

Finger-painting Fitness Landscapes: An Interactive Tool for Exploring Complex Evolutionary Dynamics. - Luis Zaman; Charles Ofria; Richard E. Lenski (ALIFE, 2012)

The SEEDS platform for evolutionary and ecological simulations. - Brian D. Connelly; Luis Zaman; Philip K. McKinley (GECCO (Companion), 2012)

Evolving Digital Ecological Networks. - Miguel A. Fortuna; Luis Zaman; Aaron P. Wagner; Charles Ofria (PLoS Comput. Biol., 2013)

Unraveling the genotype-phenotype map of evolving digital organisms. - Miguel A. Fortuna; Luis Zaman; Charles Ofria; Andreas Wagner (ECAL, 2015)

What Factors Drive the Evolution of Mutualism? - Anya E. Vostinar; Luis Zaman; Charles Ofria (GECCO (Companion), 2016)

Improved adaptation in exogenously and endogenously changing environments. - Joshua R. Nahum; Jevin West; Benjamin M. Althouse; Luis Zaman; Charles Ofria; Benjamin Kerr (ECAL, 2017)

Threshold for cooperation on irregular spatial networks. - Michael J. Wiser; Luis Zaman; Brian D. Connelly; Charles Ofria (ECAL, 2017)

The genotype-phenotype map of an evolving digital organism. - Miguel A. Fortuna; Luis Zaman; Charles Ofria; Andreas Wagner (PLoS Comput. Biol., 2017)

Investigating Open-Ended Coevolution in Digital Organisms. - Luis Zaman (ALIFE, 2018)

New Frontiers in Alife: What was old is new again. - Luis Zaman (ALIFE, 2020)

Architecture of the Genotype-Phenotype Map and the Coevolution of Complexity. - Bhaskar Kumawat; Luis Zaman (ALIFE, 2021)

Selection schemes from evolutionary computing show promise for directed evolution of microbes. - Alexander Lalejini; Emily L. Dolson; Anya E. Vostinar; Luis Zaman (GECCO Companion, 2022)

Time-travelling pathogens and their risk to ecological communities. - Giovanni Strona; Corey J. A. Bradshaw; Pedro Cardoso; Nicholas Gotelli; Frédéric Guillaume; Federica Manca; Ville Mustonen; Luis Zaman (PLoS Comput. Biol., 2023)

Trackable Island-model Genetic Algorithms at Wafer Scale. - Matthew Andres Moreno; Connor Yang; Emily L. Dolson; Luis Zaman (GECCO Companion, 2024)

Trackable Agent-based Evolution Models at Wafer Scale. - Matthew Andres Moreno; Connor Yang; Emily L. Dolson; Luis Zaman (CoRR, 2024)

A Guide to Tracking Phylogenies in Parallel and Distributed Agent-based Evolution Models. - Matthew Andres Moreno; Anika Ranjan; Emily L. Dolson; Luis Zaman (CoRR, 2024)

Structured Downsampling for Fast, Memory-efficient Curation of Online Data Streams. - Matthew Andres Moreno; Luis Zaman; Emily L. Dolson (CoRR, 2024)

Virus-host interactions predictor (VHIP): Machine learning approach to resolve microbial virus-host interaction networks. - G. Eric Bastien; Rachel N. Cable; Cecelia Batterbee; A. J. Wing; Luis Zaman; Melissa Beth Duhaime (PLoS Comput. Biol., 2024)

Downstream: efficient cross-platform algorithms for fixed-capacity stream downsampling. - Connor Yang; Joey Wagner; Emily L. Dolson; Luis Zaman; Matthew Andres Moreno (CoRR, 2025)