An Efficient Strategy for Word-Cycle Completion in Finitely Presented Groups. - Luiz M. R. Gadelha Jr.; Mauricio Ayala-Rincón (SCCC, 2001)

On the management of grid credentials. - Luiz M. R. Gadelha Jr.; Bruno Schulze (MGC, 2007)

A Lightweight Middleware Monitor for Distributed Scientific Workflows. - Sérgio Manuel Serra da Cruz; Fabrício Nogueira da Silva; Luiz M. R. Gadelha Jr.; Maria Cláudia Reis Cavalcanti; Maria Luiza Machado Campos; Marta Mattoso (CCGRID, 2008)

Kairos: An Architecture for Securing Authorship and Temporal Information of Provenance Data in Grid-Enabled Workflow Management Systems. - Luiz M. R. Gadelha Jr.; Marta Mattoso (eScience, 2008)

Towards a Threat Model for Provenance in e-Science. - Luiz M. R. Gadelha Jr.; Marta Mattoso; Michael Wilde; Ian T. Foster (IPAW, 2010)

Provenance Query Patterns for Many-Task Scientific Computing. - Luiz M. R. Gadelha Jr.; Marta Mattoso; Michael Wilde; Ian T. Foster (TaPP, 2011)

Provenance management in Swift. - Luiz M. R. Gadelha Jr.; Ben Clifford; Marta Mattoso; Michael Wilde; Ian T. Foster (Future Gener. Comput. Syst., 2011)

MTCProv: a practical provenance query framework for many-task scientific computing. - Luiz M. R. Gadelha Jr.; Michael Wilde; Marta Mattoso; Ian T. Foster (Distributed Parallel Databases, 2012)

Provenance traces of the swift parallel scripting system. - Luiz M. R. Gadelha Jr.; Michael Wilde; Marta Mattoso; Ian T. Foster (EDBT/ICDT Workshops, 2013)

Applying Provenance to Protect Attribution in Distributed Computational Scientific Experiments. - Luiz M. R. Gadelha Jr.; Marta Mattoso (IPAW, 2014)

Conceptual View Representation of the Brazilian Information System on Antarctic Environmental Research. - Rocío Zorrilla; Maira Poltosi; Luiz M. R. Gadelha Jr.; Fábio Porto 001; Ana Maria de Carvalho Moura; A. Dalto; Helena P. Lavrado; Yocie Yoneshigue-Valentin; M. Tenório; E. Xavier (Data Sci. J., 2014)

BaMBa: towards the integrated management of Brazilian marine environmental data. - Pedro Milet Meirelles; Luiz M. R. Gadelha Jr.; Ronaldo Bastos Francini-Filho; Rodrigo Leão de Moura; Gilberto Menezes Amado-Filho; Alex Cardoso Bastos; Rodolfo Pinheiro da Rocha Paranhos; Carlos Eduardo Rezende; Jean Swings; Eduardo Siegle; Nils Edvin Asp Neto; Sigrid Neumann Leitão; et al. (Database J. Biol. Databases Curation, 2015)

Model-R: A Framework for Scalable and Reproducible Ecological Niche Modeling. - Andrea Sánchez-Tapia; Marinez Ferreira de Siqueira; Rafael Oliveira Lima; Felipe Sodré M. Barros; Guilherme M. Gall; Luiz M. R. Gadelha Jr.; Luís Alexandre Estevão da Silva; Carla Osthoff (CARLA, 2017)

BioWorkbench: A High-Performance Framework for Managing and Analyzing Bioinformatics Experiments. - Maria Luiza Mondelli; Thiago Magalhães; Guilherme Loss; Michael Wilde; Ian T. Foster; Marta Mattoso; Daniel S. Katz; Helio J. C. Barbosa; Ana Tereza Ribeiro de Vasconcelos; Kary A. C. S. Ocaña; Luiz M. R. Gadelha Jr. (CoRR, 2018)

A Survey of e-Biodiversity: Concepts, Practices, and Challenges. - Luiz M. R. Gadelha Jr.; Pedro C. de Siracusa; Artur Ziviani; Eduardo Couto Dalcin; Helen Michelle Affe; Marinez Ferreira de Siqueira; Luís Alexandre Estevão da Silva; Douglas Adriano Augusto; Eduardo Krempser; Marcia Chame; Raquel Lopes Costa; Pedro Milet Meirelles; et al. (CoRR, 2018)

Towards a Science Gateway for Bioinformatics: Experiences in the Brazilian System of High Performance Computing. - Kary Ann del Carmen Ocaña Gautherot; Marcelo Galheigo; Carla Osthoff; Luiz M. R. Gadelha Jr.; Antônio Tadeu A. Gomes; Daniel de Oliveira 001; Fábio Porto 001; Ana Tereza Ribeiro de Vasconcelos (CCGRID, 2019)

Exploring Reproducibility and FAIR Principles in Data Science Using Ecological Niche Modeling as a Case Study. - Maria Luiza Mondelli; A. Townsend Peterson; Luiz M. R. Gadelha Jr. (ER Workshops, 2019)

O Que os Países escutam: Analisando a Rede de Gêneros Musicais ao Redor do Mundo. - Maria Luiza Mondelli; Luiz M. R. Gadelha Jr.; Artur Ziviani (Braz. J. Inf. Syst., 2019)

SISS-Geo: Leveraging Citizen Science to Monitor Wildlife Health Risks in Brazil. - Marcia Chame; Helio J. C. Barbosa; Luiz M. R. Gadelha Jr.; Douglas Adriano Augusto; Eduardo Krempser; Livia Abdalla (J. Heal. Informatics Res., 2019)

BioinfoPortal: A scientific gateway for integrating bioinformatics applications on the Brazilian national high-performance computing network. - Kary A. C. S. Ocaña; Marcelo Galheigo; Carla Osthoff; Luiz M. R. Gadelha Jr.; Fábio Porto 001; Antônio Tadeu A. Gomes; Daniel de Oliveira 001; Ana Tereza Ribeiro de Vasconcelos (Future Gener. Comput. Syst., 2020)

Capturing and Semantically Describing Provenance to Tell the Story of R Scripts. - Maria Luiza Mondelli; Sheeba Samuel; Birgitta König-Ries; Luiz M. R. Gadelha Jr. (e-Science, 2021)

A survey of biodiversity informatics: Concepts, practices, and challenges. - Luiz M. R. Gadelha Jr.; Pedro C. de Siracusa; Eduardo Couto Dalcin; Luís Alexandre Estevão da Silva; Douglas Adriano Augusto; Eduardo Krempser; Helen Michelle Affe; Raquel Lopes Costa; Maria Luiza Mondelli; Pedro Milet Meirelles; Fabiano L. Thompson; Marcia Chame; et al. (WIREs Data Mining Knowl. Discov., 2021)

ParslRNA-Seq: An Efficient and Scalable RNAseq Analysis Workflow for Studies of Differentiated Gene Expression. - Kary A. C. S. Ocaña; Lucas Cruz; Micaella Coelho; Rafael Terra; Marcelo Galheigo; Andre Ramos Carneiro; Diego Carvalho 001; Luiz M. R. Gadelha Jr.; Francieli Zanon Boito; Philippe O. A. Navaux; Carla Osthoff (CARLA, 2022)

Toward a Framework for Integrative, FAIR, and Reproducible Management of Data on the Dynamic Balance of Microbial Communities. - Luiz M. R. Gadelha Jr.; Martin Hohmuth; Mahnoor Zulfiqar; David Schöne; Sheeba Samuel; Maria Sorokina; Christoph Steinbeck; Birgitta König-Ries (e-Science, 2022)

Parallel Performance and I/O Profiling of HPC RNA-Seq Applications. - Lucas Cruz; Micaella Coelho; Marcelo Galheigo; André Ramos Carneiro; Diego Carvalho 001; Luiz M. R. Gadelha Jr.; Francieli Zanon Boito; Philippe O. A. Navaux; Carla Osthoff; Kary A. C. S. Ocaña (Computación y Sistemas, 2022)

The German Human Genome-Phenome Archive in an International Context: Toward a Federated Infrastructure for Managing and Analyzing Genomics and Health Data. - Luiz M. R. Gadelha Jr.; Jan Eufinger (CoRDI, 2023)

MAW: the reproducible Metabolome Annotation Workflow for untargeted tandem mass spectrometry. - Mahnoor Zulfiqar; Luiz M. R. Gadelha Jr.; Christoph Steinbeck; Maria Sorokina; Kristian Peters (J. Cheminformatics, 2023)

Evaluating the method reproducibility of deep learning models in the biodiversity domain. - Waqas Ahmed; Vamsi Krishna Kommineni; Birgitta König-Ries; Jitendra Gaikwad; Luiz M. R. Gadelha Jr.; Sheeba Samuel (CoRR, 2024)

Evaluating the method reproducibility of deep learning models in the biodiversity research. - Vamsi Krishna Kommineni; Waqas Ahmed; Birgitta König-Ries; Jitendra Gaikwad; Luiz M. R. Gadelha Jr.; Sheeba Samuel (Zenodo, 2024)

HIHISIV: a database of gene expression in HIV and SIV host immune response. - Raquel Lopes Costa; Luiz M. R. Gadelha Jr.; Mirela D'arc; Marcelo Ribeiro-Alves; David L. Robertson; Jean-Marc Schwartz; Marcelo A. Soares; Fábio Porto 001 (BMC Bioinform., 2024)

Evaluating the method reproducibility of deep learning models in biodiversity research. - Waqas Ahmed; Vamsi Krishna Kommineni; Birgitta König-Ries; Jitendra Gaikwad; Luiz M. R. Gadelha Jr.; Sheeba Samuel (PeerJ Comput. Sci., 2025)