Combinatorial Binding in Human and Mouse Embryonic Stem Cells Identifies Conserved Enhancers Active in Early Embryonic Development. - Jonathan Göke; Marc Jung; Sarah Behrens; Lukas Chavez; Sean O'Keeffe; Bernd Timmermann; Hans Lehrach; James Adjaye; Martin Vingron (PLoS Comput. Biol., 2011)

MEDIPS: genome-wide differential coverage analysis of sequencing data derived from DNA enrichment experiments. - Matthias Lienhard; Christina Grimm; Markus Morkel; Ralf Herwig; Lukas Chavez (Bioinform., 2014)

Quantitative Comparison of Large-Scale DNA Enrichment Sequencing Data. - Matthias Lienhard; Lukas Chavez (Statistical Genomics, 2016)

Active medulloblastoma enhancers reveal subgroup-specific cellular origins. - Charles Y. Lin; Serap Erkek; Yiai Tong; Linlin Yin; Alexander J. Federation; Marc Zapatka; Parthiv Haldipur; Daisuke Kawauchi; Thomas Risch; Hans-Jörg Warnatz; Barbara C. Worst; Bensheng Ju; et al. (Nat., 2016)

DNA methylation-based classification of central nervous system tumours. - David Capper; David T. W. Jones; Martin Sill; Volker Hovestadt; Daniel Schrimpf; Dominik Sturm; Christian Koelsche; Felix Sahm; Lukas Chavez; David E. Reuss; Annekathrin Kratz; Annika K. Wefers; et al. (Nat., 2018)

InTAD: chromosome conformation guided analysis of enhancer target genes. - Konstantin Okonechnikov; Serap Erkek; Jan O. Korbel; Stefan M. Pfister; Lukas Chavez (BMC Bioinform., 2019)