HDCytoData: Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats. - Lukas M. Weber; Charlotte Soneson (F1000Research, 2019)

miQC: An adaptive probabilistic framework for quality control of single-cell RNA-sequencing data. - Ariel A. Hippen; Matias M. Falco; Lukas M. Weber; Erdogan Pekcan Erkan; Kaiyang Zhang; Jennifer Anne Doherty; Anna Vähärautio; Casey S. Greene; Stephanie C. Hicks (PLoS Comput. Biol., 2021)

SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor. - Dario Righelli; Lukas M. Weber; Helena L. Crowell; Brenda Pardo; Leonardo Collado-Torres; Shila Ghazanfar; Aaron T. L. Lun; Stephanie C. Hicks; Davide Risso (Bioinform., 2022)