Rethinking the "Honest Broker" in the Changing Face of Security and Privacy. - Luke V. Rasmussen; Brian D. Athey; Andrew D. Boyd; Bradley A. Malin; Shawn N. Murphy (AMIA, 2012)

Integrating Research Recruitment into a Clinical Patient Portal. - Luke V. Rasmussen; David Were; Jeff Lunt; Steve Lee; Carl Christensen; Warren A. Kibbe; Justin Starren (AMIA, 2012)

Grouping and Translating Value Sets. - Garima Sharma; Emre Motan; Luke V. Rasmussen; Andrew Winter; Justin Starren (AMIA, 2012)

An Evaluation of the NQF Quality Data Model for Representing Electronic Health Record Driven Phenotyping Algorithms. - William K. Thompson; Luke V. Rasmussen; Jennifer A. Pacheco; Peggy L. Peissig; Joshua C. Denny; Abel N. Kho; Aaron W. Miller; Jyotishman Pathak (AMIA, 2012)

Open Source Workflow Tools for Electronic Health Record Based Phenotyping Algorithms. - William K. Thompson; Luke V. Rasmussen; Jennifer A. Pacheco; Anna Roberts; Arun Muthalagu; Abel N. Kho (AMIA, 2012)

Importance of multi-modal approaches to effectively identify cataract cases from electronic health records. - Peggy L. Peissig; Luke V. Rasmussen; Richard L. Berg; James G. Linneman; Catherine A. McCarty; Carol Waudby; Lin Chen; Joshua C. Denny; Russell A. Wilke; Jyotishman Pathak; David Carrell; Abel N. Kho; et al. (J. Am. Medical Informatics Assoc., 2012)

Development of an optical character recognition pipeline for handwritten form fields from an electronic health record. - Luke V. Rasmussen; Peggy L. Peissig; Catherine A. McCarty; Justin Starren (J. Am. Medical Informatics Assoc., 2012)

What Is Asked in Clinical Data Request Forms? A Multi-site Thematic Analysis of Forms Towards Better Data Access Support. - David A. Hanauer; Gregory William Hruby; Daniel Fort; Luke V. Rasmussen; Eneida A. Mendonça; Chunhua Weng (AMIA, 2014)

A Template for Authoring and Adapting Genomic Medicine Content in the eMERGE Infobutton Project. - Casey L. Overby; Luke V. Rasmussen; Andrea L. Hartzler; John J. Connolly; Josh F. Peterson; RoseMary Hedberg; Robert R. Freimuth; Brian H. Shirts; Joshua C. Denny; Eric B. Larson; Christopher G. Chute; Gail P. Jarvik; et al. (AMIA, 2014)

Evaluation of Existing Phenotype Authoring Tools for Clinical Research. - Luke V. Rasmussen; Jie Xu 011; Ruijue Liu; Qian Zhu 003; Jennifer A. Pacheco; Jyotishman Pathak; William K. Thompson; Joshua C. Denny; Huan Mo; Richard C. Kiefer; Peter Speltz; Enid N. H. Montague (AMIA, 2014)

Reproducibility of Health Care Datasets. - Daniel H. Schneider; Nathan D. Sisterson; Luke V. Rasmussen (AMIA, 2014)

Qualitative evaluation of three phenotype information models to find methotrexate liver injury. - Qian Zhu 003; Huan Mo; Luke V. Rasmussen; Andrew R. Post; Jennifer A. Pacheco; Jie Xu 011; Richard C. Kiefer; Peter Speltz; Enid N. H. Montague; William K. Thompson; Joshua C. Denny; Jyotishman Pathak (AMIA, 2014)

Design patterns for the development of electronic health record-driven phenotype extraction algorithms. - Luke V. Rasmussen; William K. Thompson; Jennifer A. Pacheco; Abel N. Kho; David Carrell; Jyotishman Pathak; Peggy L. Peissig; Gerard Tromp; Joshua C. Denny; Justin B. Starren (J. Biomed. Informatics, 2014)

Harmonization of Quality Data Model with HL7 FHIR to Support EHR-driven Phenotype Authoring and Execution: A Pilot Study. - Guoqian Jiang; Harold R. Solbrig; Richard C. Kiefer; Luke V. Rasmussen; Huan Mo; Jennifer A. Pacheco; Enid N. H. Montague; Jie Xu 011; Peter Speltz; William K. Thompson; Joshua C. Denny; Christopher G. Chute; et al. (AMIA, 2015)

Translating Electronic Clinical Quality Measures to Executable, Portable, and Customizable Workflows in KNIME. - Huan Mo; Jennifer A. Pacheco; Richard C. Kiefer; Luke V. Rasmussen; Jyotishman Pathak; Joshua C. Denny; William K. Thompson (AMIA, 2015)

Usability of a phenotype builder prototype and lessons learned for the design of phenotyping tools. - Enid N. H. Montague; Jie Xu 011; Luke V. Rasmussen; Joshua C. Denny; Guoqian Jiang; Richard C. Kiefer; Jennifer A. Pacheco; Peter Speltz; William K. Thompson; Jyotishman Pathak (AMIA, 2015)

PhEMA: Phenotype Modeling, Sharing and Execution Architecture. - Jyotishman Pathak; Joshua C. Denny; William K. Thompson; Luke V. Rasmussen (AMIA, 2015)

A Standards-based Semantic Metadata Repository to Support EHR-driven Phenotype Authoring and Execution. - Guoqian Jiang; Harold R. Solbrig; Richard C. Kiefer; Luke V. Rasmussen; Huan Mo; Peter Speltz; William K. Thompson; Joshua C. Denny; Christopher G. Chute; Jyotishman Pathak (MedInfo, 2015)

Desiderata for computable representations of electronic health records-driven phenotype algorithms. - Huan Mo; William K. Thompson; Luke V. Rasmussen; Jennifer A. Pacheco; Guoqian Jiang; Richard C. Kiefer; Qian Zhu 003; Jie Xu 011; Enid N. H. Montague; David S. Carrell; Todd Lingren; Frank D. Mentch; et al. (J. Am. Medical Informatics Assoc., 2015)

CSER and eMERGE: current and potential state of the display of genetic information in the electronic health record. - Brian H. Shirts; Joseph S. Salama; Samuel J. Aronson; Wendy K. Chung; Stacy W. Gray; Lucia A. Hindorff; Gail P. Jarvik; Sharon E. Plon; Elena M. Stoffel; Peter Tarczy-Hornoch; Eliezer M. Van Allen; Karen E. Weck; et al. (J. Am. Medical Informatics Assoc., 2015)

Review and evaluation of electronic health records-driven phenotype algorithm authoring tools for clinical and translational research. - Jie Xu 011; Luke V. Rasmussen; Pamela L. Shaw; Guoqian Jiang; Richard C. Kiefer; Huan Mo; Jennifer A. Pacheco; Peter Speltz; Qian Zhu 003; Joshua C. Denny; Jyotishman Pathak; William K. Thompson; et al. (J. Am. Medical Informatics Assoc., 2015)

Implementing Pharmacogenomic Clinical Decision Support: Design and Prescriber Response in the eMERGE Network. - Timothy M. Herr; Josh F. Peterson; Luke V. Rasmussen; Pedro J. Caraballo (AMIA, 2016)

An NLP Extension to the Quality Data Model for EHR-Driven Phenotype Algorithm Authoring and Execution. - Guoqian Jiang; William K. Thompson; Luke V. Rasmussen; Richard C. Kiefer; Jennifer A. Pacheco; Huan Mo; Peter Speltz; Joshua C. Denny; Jyotishman Pathak (AMIA, 2016)

Design and Implementation of an Ancillary Genomics System for the Return of Pharmacogenetic Results. - Luke V. Rasmussen; Maureen E. Smith; Federico Almaraz; Stephen D. Persell; Laura Rasmussen-Torvik; Jennifer A. Pacheco; Carl Christensen; Timothy M. Herr; Firas H. Wehbe; Justin Starren (AMIA, 2016)

Automatic identification and extraction of design patterns of EHR-driven phenotyping algorithms. - Yizhen Zhong; Luke V. Rasmussen; Justin Starren; Yuan Luo 001 (AMIA, 2016)

Using Collaboration Networks to Visualize Patterns in Clinical Trial Recruitment. - Daniel Fort; Timothy M. Herr; Paul Friedman; Luke V. Rasmussen; Justin Starren (CRI, 2016)

A Decompositional Approach to Executing Quality Data Model Algorithms on the i2b2 Platform. - Huan Mo; Guoqian Jiang; Jennifer A. Pacheco; Richard C. Kiefer; Luke V. Rasmussen; Jyotishman Pathak; Joshua C. Denny; William K. Thompson (CRI, 2016)

Data Collection Methods to Support a Multi-State Practice Care Transformation Network. - Niloufar Safaeinili; Luke V. Rasmussen; Richard Chagnon; Jody D. Ciolino; Kathryn L. Jackson; Theresa L. Walunas; Abel N. Kho (CRI, 2016)

Seamless Integration of Patient Reported Outcomes Assessments into the EHR Workflow. - Justin Starren; Christopher Bethman; Federico Almaraz; Ryan Chmiel; Michael Bass; Luke V. Rasmussen (CRI, 2016)

Practical considerations for implementing genomic information resources. - Casey L. Overby; John J. Connolly; Christopher G. Chute; Joshua C. Denny; Robert R. Freimuth; Andrea L. Hartzler; Ingrid A. Holm; Shannon F. Manzi; Jyotishman Pathak; Peggy L. Peissig; Maureen E. Smith; Marc S. Williams; et al. (Appl. Clin. Inform., 2016)

A multi-site cognitive task analysis for biomedical query mediation. - Gregory William Hruby; Luke V. Rasmussen; David A. Hanauer; Vimla L. Patel; James J. Cimino; Chunhua Weng (Int. J. Medical Informatics, 2016)

A multi-institution evaluation of clinical profile anonymization. - Raymond Heatherly; Luke V. Rasmussen; Peggy L. Peissig; Jennifer A. Pacheco; Paul A. Harris; Joshua C. Denny; Bradley A. Malin (J. Am. Medical Informatics Assoc., 2016)

PheKB: a catalog and workflow for creating electronic phenotype algorithms for transportability. - Jacqueline Kirby; Peter Speltz; Luke V. Rasmussen; Melissa A. Basford; Omri Gottesman; Peggy L. Peissig; Jennifer A. Pacheco; Gerard Tromp; Jyotishman Pathak; David S. Carrell; Stephen B. Ellis; Todd Lingren; et al. (J. Am. Medical Informatics Assoc., 2016)

The genomic CDS sandbox: An assessment among domain experts. - Ayesha Aziz; Kensaku Kawamoto; Karen Eilbeck; Marc S. Williams; Robert R. Freimuth; Mark A. Hoffman; Luke V. Rasmussen; Casey Lynnette Overby; Brian H. Shirts; James M. Hoffman; Brandon M. Welch (J. Biomed. Informatics, 2016)

Developing a data element repository to support EHR-driven phenotype algorithm authoring and execution. - Guoqian Jiang; Richard C. Kiefer; Luke V. Rasmussen; Harold R. Solbrig; Huan Mo; Jennifer A. Pacheco; Jie Xu 011; Enid N. H. Montague; William K. Thompson; Joshua C. Denny; Christopher G. Chute; Jyotishman Pathak (J. Biomed. Informatics, 2016)

Challenges impacting data collection from Electronic Health Record (EHR) Systems in Small and Medium sized practices in the Midwest. - Pauline Kenly; Luke V. Rasmussen; Andrew Schriever; Faraz S. Ahmad; Kathryn L. Jackson; Richard Chagnon; Theresa L. Walunas; Abel N. Kho (AMIA, 2017)

Leveraging Value Sets from the Value Set Authority Center (VSAC) in a Standards-Based Clinical Data Repository. - Richard C. Kiefer; Luke V. Rasmussen; Jennifer A. Pacheco; Peter Speltz; Joshua C. Denny; William K. Thompson; Jyotishman Pathak; Guoqian Jiang (AMIA, 2017)

Design and Implementation of a Structured Sequencing Report Format: A Multi-Stakeholder Perspective from eMERGE. - Luke V. Rasmussen; Darren C. Ames; Samuel J. Aronson; Lawrence J. Babb; Casey L. Overby (AMIA, 2017)

DocUBuild: A Collaborative System to Enhance Dissemination and Discovery of Genomic Clinical Content. - Luke V. Rasmussen; Casey L. Overby (AMIA, 2017)

Use of the popHealth Open-Source Quality Measure Engine to Support Cardiovascular Care at Small- and Medium-Sized Practices. - Luke V. Rasmussen; Andrew Schriever; Pauline Kenly; Dejan Jovanov; Stephen D. Persell; Theresa L. Walunas; Abel N. Kho (AMIA, 2017)

The Phenotype Execution and Modeling Architecture: A Roadmap Towards Next-generation Phenotyping Using EHRs. - Peter Speltz; Luke V. Rasmussen; Richard C. Kiefer; Jennifer A. Pacheco; William K. Thompson; Guoqian Jiang; Jyotishman Pathak; Joshua C. Denny (AMIA, 2017)

Classifying Clinical Trial Eligibility Criteria to Facilitate Phased Cohort Identification Using Clinical Data Repositories. - Amy Y. Wang; William J. Lancaster; Matthew C. Wyatt; Luke V. Rasmussen; Daniel Fort; James J. Cimino (AMIA, 2017)

Characterizing Design Patterns of EHR-Driven Phenotype Extraction Algorithms. - Yizhen Zhong; Luke V. Rasmussen; Yu Deng; Jennifer A. Pacheco; Maureen E. Smith; Justin Starren; Wei-Qi Wei; Peter Speltz; Joshua C. Denny; Nephi Walton; George Hripcsak; Christopher G. Chute; et al. (BIBM, 2018)

Portable Phenotyping System: A Portable Machine-Learning Approach to i2b2 Obesity Challenge. - Himanshu Sharma; Chengsheng Mao; Yizhen Zhang 005; Haleh Vatani; Liang Yao; Yizhen Zhong; Luke V. Rasmussen; Guoqian Jiang; Jyotishman Pathak; Yuan Luo 001 (ICHI Workshops, 2018)

Empowering genomic medicine by establishing critical sequencing result data flows: the eMERGE example. - Samuel J. Aronson; Lawrence J. Babb; Darren C. Ames; Richard A. Gibbs; Eric Venner; John J. Connelly; Keith Marsolo; Chunhua Weng; Marc S. Williams; Andrea L. Hartzler; Wayne H. Liang; James D. Ralston; et al. (J. Am. Medical Informatics Assoc., 2018)

A case study evaluating the portability of an executable computable phenotype algorithm across multiple institutions and electronic health record environments. - Jennifer A. Pacheco; Luke V. Rasmussen; Richard C. Kiefer; Thomas R. Campion Jr.; Peter Speltz; Robert J. Carroll; Sarah C. Stallings; Huan Mo; Monika Ahuja; Guoqian Jiang; Eric R. LaRose; Peggy L. Peissig; et al. (J. Am. Medical Informatics Assoc., 2018)

Evaluating the Portability of an NLP System for Processing Echocardiograms: A Retrospective, Multi-site Observational Study. - Prakash Adekkanattu; Guoqian Jiang; Yuan Luo 001; Paul R. Kingsbury; Zhenxing Xu; Luke V. Rasmussen; Jennifer A. Pacheco; Richard C. Kiefer; Daniel J. Stone; Pascal S. Brandt; Liang Yao; Yizhen Zhong; et al. (AMIA, 2019)

Development of a Genomic Data Flow Framework: Results of a Survey Administered to NIH-NHGRI IGNITE and eMERGE Consortia Participants. - Paul R. Dexter; Henry H. Ong; Amanda Elsey; Gillian Bell; Nephi Walton; Wendy K. Chung; Luke V. Rasmussen; J. Kevin Hicks; Aniwaa Owusu-obeng; Stuart A. Scott; Stephen B. Ellis; Josh F. Peterson (AMIA, 2019)

Considerations for Improving the Portability of Electronic Health Record-Based Phenotype Algorithms. - Luke V. Rasmussen; Pascal S. Brandt; Guoqian Jiang; Richard C. Kiefer; Jennifer A. Pacheco; Prakash Adekkanattu; Jessica S. Ancker; Fei Wang 001; Zhenxing Xu; Jyotishman Pathak; Yuan Luo 001 (AMIA, 2019)

Stratified Mortality Prediction of Patients with Acute Kidney Injury in Critical Care. - Zhenxing Xu; Yuan Luo 001; Prakash Adekkanattu; Jessica S. Ancker; Guoqian Jiang; Richard C. Kiefer; Jennifer A. Pacheco; Luke V. Rasmussen; Jyotishman Pathak; Fei Wang 001 (MedInfo, 2019)

Identification of Predictive Sub-Phenotypes of Acute Kidney Injury using Structured and Unstructured Electronic Health Record Data with Memory Networks. - Zhenxing Xu; Jingyuan Chou; Xi Sheryl Zhang; Yuan Luo 001; Tamara Isakova; Prakash Adekkanattu; Jessica S. Ancker; Guoqian Jiang; Richard C. Kiefer; Jennifer A. Pacheco; Luke V. Rasmussen; Jyotishman Pathak; et al. (CoRR, 2019)

Pharmacogenomic clinical decision support design and multi-site process outcomes analysis in the eMERGE Network. - Timothy M. Herr; Josh F. Peterson; Luke V. Rasmussen; Pedro J. Caraballo; Peggy L. Peissig; Justin B. Starren (J. Am. Medical Informatics Assoc., 2019)

An ancillary genomics system to support the return of pharmacogenomic results. - Luke V. Rasmussen; Maureen E. Smith; Federico Almaraz; Stephen D. Persell; Laura J. Rasmussen-Torvik; Jennifer A. Pacheco; Rex L. Chisholm; Carl Christensen; Timothy M. Herr; Firas H. Wehbe; Justin B. Starren (J. Am. Medical Informatics Assoc., 2019)

Developing a FHIR-based EHR phenotyping framework: A case study for identification of patients with obesity and multiple comorbidities from discharge summaries. - Na Hong; Andrew Wen; Daniel J. Stone; Shintaro Tsuji; Paul R. Kingsbury; Luke V. Rasmussen; Jennifer A. Pacheco; Prakash Adekkanattu; Fei Wang 001; Yuan Luo 001; Jyotishman Pathak; Hongfang Liu; et al. (J. Biomed. Informatics, 2019)

Facilitating phenotype transfer using a common data model. - George Hripcsak; Ning Shang; Peggy L. Peissig; Luke V. Rasmussen; Cong Liu 020; Barbara Benoit; Robert J. Carroll; David S. Carrell; Joshua C. Denny; Ozan Dikilitas; Vivian S. Gainer; Kayla Marie Howell; et al. (J. Biomed. Informatics, 2019)

Making work visible for electronic phenotype implementation: Lessons learned from the eMERGE network. - Ning Shang; Cong Liu 020; Luke V. Rasmussen; Casey N. Ta; Robert J. Carroll; Barbara Benoit; Todd Lingren; Ozan Dikilitas; Frank D. Mentch; David S. Carrell; Wei-Qi Wei; Yuan Luo 001; et al. (J. Biomed. Informatics, 2019)

Developing a portable natural language processing based phenotyping system. - Himanshu Sharma; Chengsheng Mao; Yizhen Zhang 005; Haleh Vatani; Liang Yao; Yizhen Zhong; Luke V. Rasmussen; Guoqian Jiang; Jyotishman Pathak; Yuan Luo 001 (BMC Medical Informatics Decis. Mak., 2019)

Feasibility of Cross-Platform EHR-Driven Phenotyping Using Clinical Quality Language. - Pascal S. Brandt; Richard C. Kiefer; Jennifer A. Pacheco; Prakash Adekkanattu; Evan Sholle; Faraz S. Ahmad; Jie Xu 012; Zhenxing Xu; Jessica S. Ancker; Fei Wang 001; Yuan Luo 001; Guoqian Jiang; et al. (AMIA, 2020)

Identification of Alzheimer's Disease Subtypes from Electronic Health Records Using a Data-Driven Approach. - Jie Xu 012; Fei Wang 001; Zhenxing Xu; Prakash Adekkanattu; Pascal S. Brandt; Guoqian Jiang; Richard C. Kiefer; Yuan Luo 001; Chengsheng Mao; Jennifer A. Pacheco; Luke V. Rasmussen; Yiye Zhang; et al. (AMIA, 2020)

Design Principles Developed through User-Centered and Socio-Technical Methods Improve Clinician Satisfaction, Speed, and Confidence in Pharmacogenomic Clinical Decision Support. - Timothy M. Herr; Therese A. Nelson; Luke V. Rasmussen; Yinan Zheng; Nicola Lancki; Justin B. Starren (CoRR, 2020)

Identifying sub-phenotypes of acute kidney injury using structured and unstructured electronic health record data with memory networks. - Zhenxing Xu; Jingyuan Chou; Xi Sheryl Zhang; Yuan Luo 001; Tamara Isakova; Prakash Adekkanattu; Jessica S. Ancker; Guoqian Jiang; Richard C. Kiefer; Jennifer A. Pacheco; Luke V. Rasmussen; Jyotishman Pathak; et al. (J. Biomed. Informatics, 2020)

Multi-site Evaluation of Longitudinal Changes in Ejection Fraction in Heart Failure Patients Through Data-driven Phenotyping. - Prakash Adekkanattu; Jennifer A. Pacheco; Joseph Kabariti; Daniel J. Stone; Yue Yu; Parag Goyal; Faraz S. Ahmad; Guoqian Jiang; Yuan Luo 001; Luke V. Rasmussen; Pascal S. Brandt; Zhenxing Xu; et al. (AMIA, 2021)

Supporting EHR-based Cohort Discovery Through User-centered Design: Results of an Early Formative Usability Study. - Natalie C. Benda; Pascal S. Brandt; Jessica S. Ancker; Jennifer A. Pacheco; Prakash Adekkanattu; Guoqian Jiang; Jyotishman Pathak; Luke V. Rasmussen (AMIA, 2021)

Impact of Sex and Gender Disparities on Computational Phenotyping: A Potential Barrier to an Equitable Learning Health System. - Rebecca T. Levinson; Jennifer R. Malinowski; Luke V. Rasmussen; Suzette J. Bielinski; Véronique L. Roger; Quinn Stanton Wells; Laura K. Wiley (AMIA, 2021)

A Deep Learning Framework Using a Pre-trained BERT Model to Predict the Risk of Progression from Mild Cognitive Impairment to Alzheimer's Disease. - Chengsheng Mao; Jie Xu 012; Luke V. Rasmussen; Jennifer A. Pacheco; Guoqian Jiang; Fei Wang 001; Richard Isaacson; Jyotishman Pathak; Yuan Luo 001 (AMIA, 2021)

Evaluation of the Portability of Natural Language Processing-based Computable Phenotypes in the eMERGE Network. - Jennifer A. Pacheco; Luke V. Rasmussen; Ken Wiley; Thomas N. Person; David J. Cronkite; Sunghwan Sohn; Shawn N. Murphy; Justin H. Gundelach; Vivian S. Gainer; Victor M. Castro; Cong Liu 020; Todd Lingren; et al. (AMIA, 2021)

FHIRTime: Standardizing Temporal Patterns Identified from Clinical Narratives Using HL7 FHIR. - Daniel J. Stone; Sijia Liu 002; Yuan Luo 001; Andrew Wen; Nansu Zong; Luke V. Rasmussen; Prakash Adekkanattu; Pascal S. Brandt; Jennifer A. Pacheco; Fei Wang 001; Cui Tao; Jyotishman Pathak; et al. (AMIA, 2021)

On Constraints and Considerations for Extending Support for Natural Language Processing-Based FHIR Resource Generation. - Andrew Wen; Luke V. Rasmussen; Daniel J. Stone; Sijia Liu 002; Prakash Adekkanattu; Pascal S. Brandt; Jennifer A. Pacheco; Yuan Luo 001; Fei Wang 001; Jyotishman Pathak; Hongfang Liu; Guoqian Jiang (AMIA, 2021)

Infobuttons for Genomic Medicine: Requirements and Barriers. - Luke V. Rasmussen; John J. Connolly; Guilherme Del Fiol; Robert R. Freimuth; Douglas B. Pet; Josh F. Peterson; Brian H. Shirts; Justin B. Starren; Marc S. Williams; Nephi Walton; Casey Overby Taylor (Appl. Clin. Inform., 2021)

Genomic considerations for FHIR®; eMERGE implementation lessons. - Mullai Murugan; Lawrence J. Babb; Casey Overby Taylor; Luke V. Rasmussen; Robert R. Freimuth; Eric Venner; Fei Yan; Victoria Yi; Stephen J. Granite; Hana Zouk; Samuel J. Aronson; Kevin Power; et al. (J. Biomed. Informatics, 2021)

AD-BERT: Using Pre-trained contextualized embeddings to Predict the Progression from Mild Cognitive Impairment to Alzheimer's Disease. - Chengsheng Mao; Jie Xu 012; Luke V. Rasmussen; Yikuan Li; Prakash Adekkanattu; Jennifer A. Pacheco; Borna Bonakdarpour; Robert Vassar; Guoqian Jiang; Fei Wang 001; Jyotishman Pathak; Yuan Luo 001 (CoRR, 2022)

Design and validation of a FHIR-based EHR-driven phenotyping toolbox. - Pascal S. Brandt; Jennifer A. Pacheco; Prakash Adekkanattu; Evan Sholle; Sajjad Abedian; Daniel J. Stone; David Knaack; Jie Xu 012; Zhenxing Xu; Yifan Peng 002; Natalie C. Benda; Fei Wang 001; et al. (J. Am. Medical Informatics Assoc., 2022)

Under-specification as the source of ambiguity and vagueness in narrative phenotype algorithm definitions. - Jingzhi Yu; Jennifer A. Pacheco; Anika S. Ghosh; Yuan Luo 001; Chunhua Weng; Ning Shang; Barbara Benoit; David S. Carrell; Robert J. Carroll; Ozan Dikilitas; Robert R. Freimuth; Vivian S. Gainer; et al. (BMC Medical Informatics Decis. Mak., 2022)

Characterizing variability of electronic health record-driven phenotype definitions. - Pascal S. Brandt; Abel N. Kho; Yuan Luo 001; Jennifer A. Pacheco; Theresa L. Walunas; Hakon Hakonarson; George Hripcsak; Cong Liu 020; Ning Shang; Chunhua Weng; Nephi Walton; David S. Carrell; et al. (J. Am. Medical Informatics Assoc., 2023)

AD-BERT: Using pre-trained language model to predict the progression from mild cognitive impairment to Alzheimer's disease. - Chengsheng Mao; Jie Xu 012; Luke V. Rasmussen; Yikuan Li; Prakash Adekkanattu; Jennifer A. Pacheco; Borna Bonakdarpour; Robert Vassar; Li Shen; Guoqian Jiang; Fei Wang 001; Jyotishman Pathak; et al. (J. Biomed. Informatics, 2023)

Seamless Integration of Computer-Adaptive Patient Reported Outcomes into an Electronic Health Record. - Kyle Nolla; Luke V. Rasmussen; Nan E. Rothrock; Zeeshan Butt; Michael Bass; Kristina Davis; David Cella; Richard Gershon; Cynthia Barnard; Ryan Chmiel; Federico Almaraz; Michael J. Schachter; et al. (Appl. Clin. Inform., 2024)

Collaborative Resource for Intensive care Translational science, Informatics, Comprehensive Analytics, and Learning (CRITICAL). - Yuan Luo 001; Luke V. Rasmussen; Andrew Williams 005; Jared Houghtaling; Andrew P. Michelson; Philip R. O. Payne; James J. Cimino; John D. Osborne; Prasanth Nannapaneni; Yikuan Li; Saki Amagai; Meghan Hutch; et al. (Zenodo, 2024)