Design and Analysis of a Bio-inspired Search Algorithm for Peer to Peer Networks. - Niloy Ganguly; Lutz Brusch; Andreas Deutsch (Self-star Properties in Complex Information Systems, 2005)

Towards in vivo computing: quantitative analysis of an artificial gene regulatory network behaving as a RS flip-flop and simulating the system in silico. - Sikander Hayat; Kai Ostermann; Lutz Brusch; Wolfgang Pompe; Gerhard Rödel (BIONETICS, 2006)

Prediction of traveling front behavior in a lattice-gas cellular automaton model for tumor invasion. - Haralambos Hatzikirou; Lutz Brusch; Carlo Schaller; Matthias Simon; Andreas Deutsch (Comput. Math. Appl., 2010)

Transdifferentiation of pancreatic cells by loss of contact-mediated signaling. - Walter de Back; Roland Zimm; Lutz Brusch (BMC Syst. Biol., 2013)

Morpheus: a user-friendly modeling environment for multiscale and multicellular systems biology. - Jörn Starruß; Walter de Back; Lutz Brusch; Andreas Deutsch (Bioinform., 2014)

Mathematical modelling of fluid transport and its regulation at multiple scales. - Osvaldo Chara; Lutz Brusch (Biosyst., 2015)

pSSAlib: The partial-propensity stochastic chemical network simulator. - Oleksandr Ostrenko; Pietro Incardona; Rajesh Ramaswamy; Lutz Brusch; Ivo F. Sbalzarini (PLoS Comput. Biol., 2017)

An Environment for Sustainable Research Software in Germany and Beyond: Current State, Open Challenges, and Call for Action. - Hartwig Anzt; Felix Bach; Stephan Druskat; Frank Löffler 001; Axel Loewe; Bernhard Y. Renard; Gunnar Seemann; Alexander Struck; Elke Achhammer; Piush Aggarwal; Franziska Appel; Michael Bader; et al. (CoRR, 2020)

An environment for sustainable research software in Germany and beyond: current state, open challenges, and call for action. - Hartwig Anzt; Felix Bach; Stephan Druskat; Frank Löffler 001; Axel Loewe; Bernhard Y. Renard; Gunnar Seemann; Alexander Struck; Elke Achhammer; Piush Aggarwal; Franziska Appel; Michael Bader; et al. (F1000Research, 2020)

Quantification of nematic cell polarity in three-dimensional tissues. - André Scholich; Simon Syga; Hernán Morales-Navarrete; Fabian Segovia-Miranda; Hidenori Nonaka; Kirstin Meyer; Walter de Back; Lutz Brusch; Yannis Kalaidzidis; Marino Zerial; Frank Jülicher; Benjamin M. Friedrich (PLoS Comput. Biol., 2020)

A modular framework for multiscale, multicellular, spatiotemporal modeling of acute primary viral infection and immune response in epithelial tissues and its application to drug therapy timing and effectiveness. - T. J. Sego; Josua Aponte-Serrano; Juliano Ferrari Gianlupi; Samuel R. Heaps; Kira Breithaupt; Lutz Brusch; Jessica R. Crawshaw; James M. Osborne; Ellen M. Quardokus; Richard K. Plemper; James A. Glazier (PLoS Comput. Biol., 2020)

Correction: Quantification of nematic cell polarity in three-dimensional tissues. - André Scholich; Simon Syga; Hernán Morales-Navarrete; Fabian Segovia-Miranda; Hidenori Nonaka; Kirstin Meyer; Walter de Back; Lutz Brusch; Yannis Kalaidzidis; Marino Zerial; Frank Jülicher; Benjamin M. Friedrich (PLoS Comput. Biol., 2021)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (CoRR, 2022)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (Nucleic Acids Res., 2022)

Collective cell migration due to guidance-by-followers is robust to multiple stimuli. - Robert Müller; Arthur Boutillon; Diego Jahn; Jörn Starruß; Nicolas B. David; Lutz Brusch (Frontiers Appl. Math. Stat., 2023)

FitMultiCell: simulating and parameterizing computational models of multi-scale and multi-cellular processes. - Emad Alamoudi; Yannik Schälte; Robert Müller; Jörn Starruß; Nils Bundgaard; Frederik Graw; Lutz Brusch; Jan Hasenauer (Bioinform., 2023)

Deep Neural Cellular Potts Models. - Koen Minartz; Tim D'Hondt; Leon Hillmann; Jörn Starruß; Lutz Brusch; Vlado Menkovski (CoRR, 2025)