Comparison of clustering tools in R for medium-sized 10x Genomics single-cell RNA-sequencing data. - Saskia Freytag; Luyi Tian; Ingrid Lönnstedt; Milica Ng; Melanie Bahlo (F1000Research, 2018)

scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data. - Luyi Tian; Shian Su; Xueyi Dong; Daniela Amann-Zalcenstein; Christine Biben; Azadeh Seidi; Douglas J. Hilton; Shalin H. Naik; Matthew E. Ritchie (PLoS Comput. Biol., 2018)

CellBench: R/Bioconductor software for comparing single-cell RNA-seq analysis methods. - Shian Su; Luyi Tian; Xueyi Dong; Peter F. Hickey; Saskia Freytag; Matthew E. Ritchie (Bioinform., 2020)

New protocols and computational tools for scRNAseq analysis. - Luyi Tian (2020)

BayesImpute: a Bayesian imputation method for single-cell RNA-seq data. - Siqi Chen; Ruiqing Zheng; Luyi Tian; Fang-Xiang Wu; Min Li 007 (BIBM, 2022)