Detecting similar binding pockets to enable systems polypharmacology. - Miquel Duran-Frigola; Lydia Siragusa; Eytan Ruppin; Xavier Barril; Gabriele Cruciani; Patrick Aloy (PLoS Comput. Biol., 2017)

Automatic Identification of Lansoprazole Degradants under Stress Conditions by LC-HRMS with MassChemSite and WebChembase. - Stefano Bonciarelli; Jenny Desantis; Laura Goracci; Lydia Siragusa; Ismael Zamora; Elisabeth Ortega-Carrasco (J. Chem. Inf. Model., 2021)

CROMATIC: Cross-Relationship Map of Cavities from Coronaviruses. - Lydia Siragusa; Gabriele Menna; Fabrizio Buratta; Massimo Baroni; Jenny Desantis; Gabriele Cruciani; Laura Goracci (J. Chem. Inf. Model., 2022)

Getting Insights into Structural and Energetic Properties of Reciprocal Peptide-Protein Interactions. - Daniela Trisciuzzi; Lydia Siragusa; Massimo Baroni; Ida Autiero; Orazio Nicolotti; Gabriele Cruciani (J. Chem. Inf. Model., 2022)

An Integrated Machine Learning Model To Spot Peptide Binding Pockets in 3D Protein Screening. - Daniela Trisciuzzi; Lydia Siragusa; Massimo Baroni; Gabriele Cruciani; Orazio Nicolotti (J. Chem. Inf. Model., 2022)

Comparative Study of Allosteric GPCR Binding Sites and Their Ligandability Potential. - Sonja Peter; Lydia Siragusa; Morgan Thomas; Tommaso Palomba; Simon Cross; Noel M. O'Boyle; Dávid Bajusz; György G. Ferenczy; György M. Keserü; Giovanni Bottegoni; Brian Joseph Bender; I-Jen Chen; et al. (J. Chem. Inf. Model., 2024)