Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase. - Pascale Gaudet; Lydie Lane; Petra Fey; Alan J. Bridge; Sylvain Poux; Andrea H. Auchincloss; Kristian B. Axelsen; Silvia Braconi-Quintaje; Emmanuel Boutet; P. Brown; Elisabeth Coudert; Ruchira S. Datta; et al. (Database J. Biol. Databases Curation, 2009)

A Preliminary Study on the Prediction of Human Protein Functions. - Guido Bologna; Anne-Lise Veuthey; Marco Pagni; Lydie Lane; Amos Bairoch (IWINAC (1), 2011)

neXtProt: a knowledge platform for human proteins. - Lydie Lane; Ghislaine Argoud-Puy; Aurore Britan; Isabelle Cusin; Paula Duek Roggli; Olivier Evalet; Alain Gateau; Pascale Gaudet; Anne Gleizes; Alexandre Masselot; Catherine Zwahlen; Amos Bairoch (Nucleic Acids Res., 2012)

Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support. - Heinz Stockinger; Adrian M. Altenhoff; Konstantin Arnold; Amos Bairoch; Frederic B. Bastian; Sven Bergmann; Lydie Bougueleret; Philipp Bucher; Mauro Delorenzi; Lydie Lane; Philippe Le Mercier; Frédérique Lisacek; et al. (Nucleic Acids Res., 2014)

Querying neXtProt nanopublications and their value for insights on sequence variants and tissue expression. - Christine Chichester; Pascale Gaudet; Oliver Karch; Paul Groth; Lydie Lane; Amos Bairoch; Barend Mons; Antonis Loizou (J. Web Semant., 2014)

The neXtProt knowledgebase on human proteins: current status. - Pascale Gaudet; Pierre-André Michel; Monique Zahn-Zabal; Isabelle Cusin; Paula Duek Roggli; Olivier Evalet; Alain Gateau; Anne Gleizes; Mario Pereira; Daniel Dinis Teixeira; Ying Zhang; Lydie Lane; et al. (Nucleic Acids Res., 2015)

Converting neXtProt into Linked Data and nanopublications. - Christine Chichester; Oliver Karch; Pascale Gaudet; Lydie Lane; Barend Mons; Amos Bairoch (Semantic Web, 2015)

PepPSy: a web server to prioritize gene products in experimental and biocuration workflows. - Olivier Sallou; Paula Duek Roggli; Thomas A. Darde; Olivier Collin; Lydie Lane; Frédéric Chalmel (Database J. Biol. Databases Curation, 2016)

The neXtProt peptide uniqueness checker: a tool for the proteomics community. - Mathieu Schaeffer; Alain Gateau; Daniel Dinis Teixeira; Pierre-André Michel; Monique Zahn-Zabal; Lydie Lane (Bioinform., 2017)

The neXtProt knowledgebase on human proteins: 2017 update. - Pascale Gaudet; Pierre-André Michel; Monique Zahn-Zabal; Aurore Britan; Isabelle Cusin; Marcin Domagalski; Paula Duek Roggli; Alain Gateau; Anne Gleizes; Valérie Hinard; Valentine Rech de Laval; JinJin Lin; et al. (Nucleic Acids Res., 2017)

The neXtProt knowledgebase in 2020: data, tools and usability improvements. - Monique Zahn-Zabal; Pierre-André Michel; Alain Gateau; Frédéric Nikitin; Mathieu Schaeffer; Estelle Audot; Pascale Gaudet; Paula Duek Roggli; Daniel Dinis Teixeira; Valentine Rech de Laval; Kasun Samarasinghe; Amos Bairoch; et al. (Nucleic Acids Res., 2020)

Functionathon: a manual data mining workflow to generate functional hypotheses for uncharacterized human proteins and its application by undergraduate students. - Paula Duek Roggli; Camille Mary; Monique Zahn-Zabal; Amos Bairoch; Lydie Lane (Database J. Biol. Databases Curation, 2021)

A federated query between neXtProt and OrthoDB retrieves 44 uncharacterized human proteins highly expressed in the brain and conserved in Drosophila melanogaster. - Lydie Lane; Kasun Samarasinghe; Pierre-André Michel (SWAT4HCLS, 2023)

Protein function prediction as approximate semantic entailment. - Maxat Kulmanov; Francisco J. Guzmán-Vega; Paula Duek Roggli; Lydie Lane; Stefan T. Arold; Robert Hoehndorf (Nat. Mac. Intell., 2024)