A Probabilistic Programming Approach to Protein Structure Superposition. - Lys Sanz Moreta; Ahmad Salim Al-Sibahi; Douglas L. Theobald; William Bullock; Basile Nicolas Rommes; Andreas Manoukian; Thomas Hamelryck (CIBCB, 2019)

Bayesian protein superposition using Hamiltonian Monte Carlo. - Lys Sanz Moreta; Ahmad Salim Al-Sibahi; Thomas Hamelryck (BIBE, 2020)

Efficient Generative Modelling of Protein Structure Fragments using a Deep Markov Model. - Christian B. Thygesen; Christian Skjødt Steenmans; Ahmad Salim Al-Sibahi; Lys Sanz Moreta; Anders Bundgård Sørensen; Thomas Hamelryck (ICML, 2021)

Ancestral protein sequence reconstruction using a tree-structured Ornstein-Uhlenbeck variational autoencoder. - Lys Sanz Moreta; Ola Rønning; Ahmad Salim Al-Sibahi; Jotun Hein; Douglas L. Theobald; Thomas Hamelryck (ICLR, 2022)

Vegvisir: Probabilistic Model (VAE) for Viral T-Cell Epitope Prediction. - Lys Sanz Moreta; Ibel Carri; Heli M. Garcia Alvarez; Morten Nielsen 001 (LOD (2), 2024)