A Semantic Mediation Approach for Problems in Computational Molecular Biology. - Monica Chagoyen; M. Erdem Kurul; Pedro A. de Alarcón; Simone Santini; Bertram Ludäscher; José María Carazo; Amarnath Gupta (CSB, 2003)

Designing and executing scientific workflows with a programmable integrator. - Monica Chagoyen; M. Erdem Kurul; Pedro A. de Alarcón; José María Carazo; Amarnath Gupta (Bioinform., 2004)

A Semantic-aware RDF Query Algebra. - Li Chen 027; Amarnath Gupta; M. Erdem Kurul (COMAD (b), 2005)

Efficient Algorithms for Pattern Matching on Directed Acyclic Graphs. - Li Chen 027; Amarnath Gupta; M. Erdem Kurul (ICDE, 2005)

Stack-based Algorithms for Pattern Matching on DAGs. - Li Chen 027; Amarnath Gupta; M. Erdem Kurul (VLDB, 2005)