PanTools: representation, storage and exploration of pan-genomic data. - Siavash Sheikhizadeh; M. Eric Schranz; Mehmet Akdel; Dick de Ridder; Sandra Smit (Bioinform., 2016)

Efficient inference of homologs in large eukaryotic pan-proteomes. - Siavash Sheikhizadeh; Dick de Ridder; M. Eric Schranz; Sandra Smit (BMC Bioinform., 2018)

Fibrillarin evolution through the Tree of Life: Comparative genomics and microsynteny network analyses provide new insights into the evolutionary history of Fibrillarin. - Alejandro Pereira-Santana; Samuel David Gamboa-Tuz; Tao Zhao; M. Eric Schranz; Pablo Vinuesa; Andrea Bayona; Luis C. Rodríguez-Zapata; Enrique Castaño (PLoS Comput. Biol., 2020)

syntenet: an R/Bioconductor package for the inference and analysis of synteny networks. - Fabricio Almeida-Silva; Tao Zhao; Kristian K. Ullrich; M. Eric Schranz; Yves Van de Peer (Bioinform., 2023)