TopPred II: an improved software for membrane protein structure predictions. - M. Gonzalo Claros; Gunnar von Heijne (Comput. Appl. Biosci., 1994)

MitoProt, a Macintosh application for studying mitochondrial proteins. - M. Gonzalo Claros (Comput. Appl. Biosci., 1995)

SeqTrim - A Validation and Trimming Tool for All Purpose Sequence Reads. - Juan Falgueras; Antonio J. Lara; Francisco R. Cantón; Guillermo Pérez-Trabado; M. Gonzalo Claros (Innovations in Hybrid Intelligent Systems, 2008)

A Web Tool to Discover Full-Length Sequences - Full-Lengther. - Antonio J. Lara; Guillermo Pérez-Trabado; David P. Villalobos; Sara Díaz-Moreno; Francisco R. Cantón; M. Gonzalo Claros (Innovations in Hybrid Intelligent Systems, 2008)

Intuitive Bioinformatics for Genomics Applications: Omega-Brigid Workflow Framework. - David Díaz; Sergio Gálvez; Juan Falgueras; Juan Antonio Caballero; Pilar Hernández; M. Gonzalo Claros; Gabriel Dorado (IWANN (2), 2009)

On Selecting the Best Pre-processing Method for Affymetrix Genechips. - J. P. Florido; Héctor Pomares; Ignacio Rojas; José C. Calvo; José M. Urquiza; M. Gonzalo Claros (IWANN (1), 2009)

PreP+07: improvements of a user friendly tool to preprocess and analyse microarray data. - Victoria Martin-Requena; Antonio Muñoz-Merida; M. Gonzalo Claros; Oswaldo Trelles (BMC Bioinform., 2009)

Effect of pre-processing methods on microarray-based SVM classifiers in affymetrix genechips. - Javier Perez-Florido; Héctor Pomares; Ignacio Rojas; José Miguel Urquiza Ortiz; Luis Javier Herrera; Manuel Gonzalo Claros (IJCNN, 2010)

GENote v.β: A Web Tool Prototype for Annotation of Unfinished Sequences in Non-model Eukaryotes. - Noé Fernández-Pozo; Darío Guerrero-Fernández; Rocío Bautista; Josefa Gómez-Maldonado; Concepción Avila; Francisco M. Cánovas; M. Gonzalo Claros (JBI, 2010)

AlignMiner: a Web-based tool for detection of divergent regions in multiple sequence alignments of conserved sequences. - Darío Guerrero-Fernández; Rocío Bautista; David P. Villalobos; Francisco R. Cantón; M. Gonzalo Claros (Algorithms Mol. Biol., 2010)

SeqTrim: a high-throughput pipeline for pre-processing any type of sequence read. - Juan Falgueras; Antonio J. Lara; Noé Fernández-Pozo; Francisco R. Cantón; Guillermo Pérez-Trabado; M. Gonzalo Claros (BMC Bioinform., 2010)

MOWServ: a web client for integration of bioinformatic resources. - Sergio Ramírez; Antonio Muñoz-Merida; Tor Johan Mikael Karlsson; Maximiliano García; Antonio J. Pérez-Pulido; M. Gonzalo Claros; Oswaldo Trelles (Nucleic Acids Res., 2010)

Detecting and correcting mis-assembled reads in contigs. - Hicham Benzekri; Darío Guerrero-Fernández; Rocío Bautista; M. Gonzalo Claros (IWBBIO, 2013)

FQbin a compatible and optimized format for storing and managing sequence data. - Darío Guerrero-Fernández; Rafael Larrosa; M. Gonzalo Claros (IWBBIO, 2013)

AutoFlow: an easy way to build workflows. - Pedro Seoane; Rosario Carmona; Rocío Bautista; Darío Guerrero-Fernández; Manuel Gonzalo Claros (IWBBIO, 2014)

Robust gene signatures from microarray data using genetic algorithms enriched with biological pathway keywords. - Rafael Marcos Luque Baena; Daniel Urda; M. Gonzalo Claros; Leonardo Franco; José M. Jerez (J. Biomed. Informatics, 2014)

DEgenes Hunter - A Self-customised Gene Expression Analysis Workflow for Non-model Organisms. - Isabel González Gayte; Rocío Bautista Moreno; M. Gonzalo Claros (IWBBIO (2), 2015)

Identification and in silico Analysis of NADPH Oxidase Homologues Involved in Allergy from an Olive Pollen Transcriptome. - María José Jiménez-Quesada; Jose Ángel Traverso; Adoración Zafra; Jose C. Jimenez-Lopez; Rosario Carmona; M. Gonzalo Claros; Juan D. Alché (IWBBIO (1), 2015)

Bioinformatics Analyses to Separate Species Specific mRNAs from Unknown Sequences in de novo Assembled Transcriptomes. - David Velasco; Pedro Seoane; M. Gonzalo Claros (IWBBIO (2), 2015)

Identification of Distinctive Variants of the Olive Pollen Allergen Ole e 5 (Cu, Zn Superoxide Dismutase) throughout the Analysis of the Olive Pollen Transcriptome. - Adoración Zafra; Rosario Carmona; Jose C. Jimenez-Lopez; Amada Pulido; M. Gonzalo Claros; Juan D. Alché (IWBBIO (1), 2015)

Automatic Workflow for the Identification of Constitutively-Expressed Genes Based on Mapped NGS Reads. - Rosario Carmona; Pedro Seoane; Adoración Zafra; María José Jiménez-Quesada; Juan de Dios Alché; M. Gonzalo Claros (IWBBIO, 2016)

Transcriptome-Based Identification of a Seed Olive Legumin (11S Globulin). Characterization of Subunits, 3D Modelling and Molecular Assessment of Allergenicity. - Adoración Zafra; José Carlos Jimenez-Lopez; Rosario Carmona; M. Gonzalo Claros; Juan de Dios Alché (IWBBIO, 2016)

Obtaining the Most Accurate de novo Transcriptomes for Non-model Organisms: The Case of Castanea sativa. - Marina Espigares; Pedro Seoane; Rocío Bautista; Julia Quintana; Luis Gómez; M. Gonzalo Claros (IWBBIO (2), 2017)

Identification and in silico Analysis of Glutathione Reductase Transcripts Expressed in Olive (Olea europaea L.) Pollen and Pistil. - Estefanía García-Quirós; Rosario Carmona; Adoración Zafra; M. Gonzalo Claros; Juan de Dios Alché (IWBBIO (2), 2017)

NearTrans Can Identify Correlated Expression Changes Between Retrotransposons and Surrounding Genes in Human Cancer. - Rafael Larrosa; Macarena Arroyo; Rocío Bautista; Carmen María López-Rodríguez; M. Gonzalo Claros (IWBBIO (1), 2018)

TransFlow: a modular framework for assembling and assessing accurate de novo transcriptomes in non-model organisms. - Pedro Seoane; Marina Espigares; Rosario Carmona; Álvaro Polonio; Julia Quintana; Enrico Cretazzo; Josefina Bota; Alejandro Pérez-García; Juan de Dios Alché; Luis Gómez; M. Gonzalo Claros (BMC Bioinform., 2018)

BLASSO: integration of biological knowledge into a regularized linear model. - Daniel Urda; Francisco Aragón; Rocío Bautista; Leonardo Franco; Francisco J. Veredas 001; Manuel Gonzalo Claros; José Manuel Jerez (BMC Syst. Biol., 2018)

Expression Change Correlations Between Transposons and Their Adjacent Genes in Lung Cancers Reveal a Genomic Location Dependence and Highlights Cancer-Significant Genes. - Macarena Arroyo; Rafael Larrosa; M. Gonzalo Claros; Rocío Bautista (IWBBIO (1), 2019)

De novo Transcriptome Assembly of Solea senegalensis v5.0 Using TransFlow. - José Córdoba-Caballero; Pedro Seoane-Zonjic; Manuel Manchado; M. Gonzalo Claros (IWBBIO (1), 2019)

Structural and Functional Features of Glutathione Reductase Transcripts from Olive (Olea europaea L.) Seeds. - Elena Lima-Cabello; Isabel Martínez-Beas; Estefanía García-Quirós; Rosario Carmona; M. Gonzalo Claros; Jose Carlos Jimenez-Lopez; Juan de Dios Alché (IWBBIO (1), 2019)

Micro-Variations from RNA-seq Experiments for Non-model Organisms. - Elena Espinosa; Macarena Arroyo; Rafael Larrosa; Manuel Manchado; M. Gonzalo Claros; Rocío Bautista (IWBBIO, 2020)