DOLOP-database of bacterial lipoproteins. - M. Madan Babu; K. Sankaran (Bioinform., 2002)

NCI: a server to identify non-canonical interactions in protein structures. - M. Madan Babu (Nucleic Acids Res., 2003)

Statistical analysis of domains in interacting protein pairs. - Tom M. W. Nye; Carlo Berzuini; Walter R. Gilks; M. Madan Babu; Sarah A. Teichmann (Bioinform., 2005)

Evolutionary and Temporal Dynamics of Transcriptional Regulatory Networks. - M. Madan Babu (BIOWIRE, 2007)

Functional and Transcriptional Coherency of Modules in the Human Protein Interaction Network . - Matthias E. Futschik; Gautam Chaurasia; Anna Tschaut; Jenny Russ; M. Madan Babu; Hanspeter Herzel (J. Integr. Bioinform., 2007)

Exploiting gene deletion fitness effects in yeast to understand the modular architecture of protein complexes under different growth conditions. - Roland A. Pache; M. Madan Babu; Patrick Aloy (BMC Syst. Biol., 2009)

Spial: analysis of subtype-specific features in multiple sequence alignments of proteins. - Arthur Wuster; A. J. Venkatakrishnan; Gebhard F. X. Schertler; M. Madan Babu (Bioinform., 2010)

Classifying pairs with trees for supervised biological network inference. - Marie Schrynemackers; Louis Wehenkel; M. Madan Babu; Pierre Geurts (CoRR, 2014)

Universal allosteric mechanism for Gα activation by GPCRs. - Tilman Flock; Charles N. J. Ravarani; Dawei Sun 002; A. J. Venkatakrishnan; Melis Kayikci; Christopher G. Tate; Dmitry B. Veprintsev; M. Madan Babu (Nat., 2015)

Diverse activation pathways in class A GPCRs converge near the G-protein-coupling region. - A. J. Venkatakrishnan; Xavier Deupí; Guillaume Lebon; Franziska M. Heydenreich; Tilman Flock; Tamara Miljus; Santhanam Balaji; Michel Bouvier; Dmitry B. Veprintsev; Christopher G. Tate; Gebhard F. X. Schertler; M. Madan Babu (Nat., 2016)

Selectivity determinants of GPCR-G-protein binding. - Tilman Flock; Alexander S. Hauser; Nadia Lund; David E. Gloriam; Santhanam Balaji; M. Madan Babu (Nat., 2017)

Abstract: Variation in GPCR signaling: Implications for drug discovery. - M. Madan Babu (BIBM, 2021)

Biological impact of mutually exclusive exon switching. - Su Datt Lam; M. Madan Babu; Jonathan G. Lees; Christine A. Orengo (PLoS Comput. Biol., 2021)