Cellular State Transformations Using Deep Learning for Precision Medicine Applications. - Colin Targonski; M. Reed Bender; Benjamin T. Shealy; Benafsh Husain; Bill Paseman; Melissa C. Smith; F. Alex Feltus (Patterns, 2020)

GEMmaker: process massive RNA-seq datasets on heterogeneous computational infrastructure. - John A. Hadish; Tyler Biggs; Benjamin T. Shealy; M. Reed Bender; Coleman McKnight; Connor Wytko; Melissa C. Smith; F. Alex Feltus; Loren A. Honaas; Stephen P. Ficklin (BMC Bioinform., 2022)