PREMO: A Framework for Multimedia Middleware - Specification, Rationale, and Java Binding - David J. Duke; Ivan Herman; M. Scott Marshall (Springer, 1999)

Graph Visualisation and Navigation in Information Visualisation. - Iván Herman; Guy Melançon; M. Scott Marshall (Eurographics (State of the Art Reports), 1999)

Skeletal Images as Visual Cues in Graph Visualization. - Iván Herman; M. Scott Marshall; Guy Melançon; David J. Duke; Maylis Delest; Jean-Philippe Domenger (VisSym, 1999)

Graph Data Format Workshop Report. - Ulrik Brandes; M. Scott Marshall; Stephen C. North (GD, 2000)

GraphXML - An XML-Based Graph Description Format. - Ivan Herman; M. Scott Marshall (GD, 2000)

Density Functions for Visual Attributes and Effective Partitioning in Graph Visualization. - Ivan Herman; M. Scott Marshall; Guy Melançon (INFOVIS, 2000)

Graph Visualization and Navigation in Information Visualization: A Survey. - Ivan Herman; Guy Melançon; M. Scott Marshall (IEEE Trans. Vis. Comput. Graph., 2000)

GraphML Progress Report. - Ulrik Brandes; Markus Eiglsperger; Ivan Herman; Michael Himsolt; M. Scott Marshall (GD, 2001)

An object-oriented design for graph visualization. - M. Scott Marshall; Ivan Herman; Guy Melançon (Softw. Pract. Exp., 2001)

Using Semantic Web Tools to Integrate Experimental Measurement Data on Our Own Terms. - M. Scott Marshall; Lennart J. G. Post; Marco Roos; Timo M. Breit (OTM Workshops (1), 2006)

A Survey of Requirements for Automated Reasoning Services for Bio-Ontolgies in OWL. - C. Maria Keet; Marco Roos; M. Scott Marshall (OWLED, 2007)

Ontology-Based Data Integration For Biomedical Research. - Vipul Kashyap; Kei-Hoi Cheung; Donald Doherty; Matthias Samwald; M. Scott Marshall; Joanne Luciano; Susie Stephens; Ivan Herman; Raymond Hookway (The Semantic Web: Real-World Applications from Industry, 2007)

A semantic web approach applied to integrative bioinformatics experimentation: a biological use case with genomics data. - Lennart J. G. Post; Marco Roos; M. Scott Marshall; Roel van Driel; Timo M. Breit (Bioinform., 2007)

Advancing translational research with the Semantic Web. - Alan Ruttenberg; Tim Clark; William J. Bug; Matthias Samwald; Olivier Bodenreider; Helen Chen; Donald Doherty; Kerstin Forsberg; Yong Gao; Vipul Kashyap; June Kinoshita; Joanne Luciano; et al. (BMC Bioinform., 2007)

Enabling Data Transport between Web Services through alternative protocols and Streaming. - Spiros Koulouzis; Edgar Meij; M. Scott Marshall; Adam Belloum (eScience, 2008)

Structuring Mined Knowledge for the Support of Hypothesis Generation in Molecular Biology. - Marco Roos; M. Scott Marshall; Andrew P. Gibson; Pieter W. Adriaans (SWAT4LS, 2008)

Life sciences on the Semantic Web: the Neurocommons and beyond. - Alan Ruttenberg; Jonathan Rees; Matthias Samwald; M. Scott Marshall (Briefings Bioinform., 2009)

A journey to Semantic Web query federation in the life sciences. - Kei-Hoi Cheung; H. Robert Frost; M. Scott Marshall; Eric Prud'hommeaux; Matthias Samwald; Jun Zhao 003; Adrian Paschke (BMC Bioinform., 2009)

Structuring and extracting knowledge for the support of hypothesis generation in molecular biology. - Marco Roos; M. Scott Marshall; Andrew P. Gibson; Martijn J. Schuemie; Edgar Meij; Sophia Katrenko; Willem Robert van Hage; Konstantinos Krommydas; Pieter W. Adriaans (BMC Bioinform., 2009)

A Linked Data Approach to Sharing Workflows and Workflow Results. - Marco Roos; Sean Bechhofer; Jun Zhao 003; Paolo Missier; David R. Newman; David De Roure; M. Scott Marshall (ISoLA (1), 2010)

Provenance of Microarray Experiments for a Better Understanding of Experiment Results. - Helena F. Deus; Jun Zhao 003; Satya S. Sahoo; Matthias Samwald; Eric Prud'hommeaux; Michael Miller 001; M. Scott Marshall; Kei-Hoi Cheung (SWPM@ISWC, 2010)

The AIDA Toolkit - a Tool for Users and Developers. - Adianto Wibisono; Marco Roos; M. Scott Marshall (SWAT4LS, 2010)

Semantic Disclosure in an e-Science Environment. - M. Scott Marshall; Marco Roos; Edgar Meij; Sophia Katrenko; Willem Robert van Hage; Pieter W. Adriaans (Semantic e-Science, 2010)

Towards an Interoperable Information Infrastructure Providing Decision Support for Genomic Medicine. - Matthias Samwald; Holger Stenzhorn; Michel Dumontier; M. Scott Marshall; Joanne Luciano; Klaus-Peter Adlassnig (MIE, 2011)

The RDF foundry: call for an initiative to build enhanced RDF resources for biological data integration. - Aravind Venkatesan; Ward Blondé; Erick Antezana; Mats Skillingstad; M. Scott Marshall; Bernard De Baets; Vladimir Mironov; Martin Kuiper (WIMS, 2011)

The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside. - Joanne S. Luciano; Bosse Andersson; Colin R. Batchelor; Olivier Bodenreider; Tim Clark; Christine K. Denney; Christopher Domarew; Thomas Gambet; Lee Harland; Anja Jentzsch; Vipul Kashyap; Peter J. Kos; et al. (J. Biomed. Semant., 2011)

Biomedical semantics in the Semantic Web. - Andrea Splendiani; Albert Burger; Adrian Paschke; Paolo Romano 001; M. Scott Marshall (J. Biomed. Semant., 2011)

Linked open drug data for pharmaceutical research and development. - Matthias Samwald; Anja Jentzsch; Christopher Bouton; Claus Kallesøe; Egon L. Willighagen; Janos G. Hajagos; M. Scott Marshall; Eric Prud'hommeaux; Oktie Hassanzadeh; Elgar Pichler; Susie Stephens (J. Cheminformatics, 2011)

Semantic Web Applications and Tools for the Life Sciences: SWAT4LS 2010. - Albert Burger; Adrian Paschke; Paolo Romano 001; M. Scott Marshall; Andrea Splendiani (BMC Bioinform., 2012)

Translating standards into practice - One Semantic Web API for Gene Expression. - Helena F. Deus; Eric Prud'hommeaux; Michael Miller 001; Jun Zhao 003; James Malone; Tomasz Adamusiak; Jamie P. McCusker; Sudeshna Das 001; Philippe Rocca-Serra; Ronan Fox; M. Scott Marshall (J. Biomed. Informatics, 2012)

Emerging practices for mapping and linking life sciences data using RDF - A case series. - M. Scott Marshall; Richard D. Boyce; Helena F. Deus; Jun Zhao 003; Egon L. Willighagen; Matthias Samwald; Elgar Pichler; Janos G. Hajagos; Eric Prud'hommeaux; Susie Stephens (J. Web Semant., 2012)

An RDF/OWL Knowledge Base for Query Answering and Decision Support in Clinical Pharmacogenetics. - Matthias Samwald; Robert R. Freimuth; Joanne S. Luciano; Simon M. Lin; Robert L. Powers; M. Scott Marshall; Klaus-Peter Adlassnig; Michel Dumontier; Richard D. Boyce (MedInfo, 2013)

Analysis of the Suitability of Existing Medical Ontologies for Building a Scalable Semantic Interoperability Solution Supporting Multi-site Collaboration in Oncology. - Ahmed Ibrahim; Anca I. D. Bucur; Andre Dekker; M. Scott Marshall; David Pérez-Rey; Raúl Alonso-Calvo; Holger Stenzhorn; Sheng Yu 008; Cyril Krykwinski; Anouar Laarif; Keyur Mehta (BIBE, 2014)

Towards a semantic PACS: Using Semantic Web technology to represent imaging data. - Johan van Soest; Tim Lustberg; Detlef Grittner; M. Scott Marshall; Lucas Persoon; Bas Nijsten; Peter Feltens; Andre Dekker (MIE, 2014)

Information extraction of eligibility criteria for trial enrolment support. - M. Scott Marshall; Johan van Soest; R. Dresens; J. Paulissen; Philippe Lambin; Andre Dekker (MIE, 2015)

A Topic-centric Approach to Detecting New Evidences for Evidence-based Medical Guidelines. - Qing Hu 002; Zhisheng Huang; Annette ten Teije; Frank van Harmelen; M. Scott Marshall; Andre Dekker (HEALTHINF, 2016)