BioShell Threader: protein homology detection based on sequence profiles and secondary structure profiles. - Dominik Gront; Maciej Blaszczyk; Piotr Wojciechowski 003; Andrzej Kolinski (Nucleic Acids Res., 2012)

CABS-fold: server for the de novo and consensus-based prediction of protein structure. - Maciej Blaszczyk; Michal Jamróz 001; Sebastian Kmiecik; Andrzej Kolinski (Nucleic Acids Res., 2013)

CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site. - Mateusz Kurcinski; Michal Jamróz 001; Maciej Blaszczyk; Andrzej Kolinski; Sebastian Kmiecik (Nucleic Acids Res., 2015)

Protein-peptide docking using CABS-dock and contact information. - Maciej Blaszczyk; Maciej Pawel Ciemny; Andrzej Kolinski; Mateusz Kurcinski; Sebastian Kmiecik (Briefings Bioinform., 2019)