Scaling R Shiny Apps to Multiple Concurrent Users in a Secured HPC Environment Using Open OnDemand. - Eric Franz; Hatice Gulcin Ozer; Trey Dockendorf; Venkat Sundar Gadepalli; Amy Webb; Alan Chalker; Maciej Pietrzak; Morgan E. Rodgers; Douglas Johnson; David E. Hudak (PEARC, 2019)

BISR-RNAseq: an efficient and scalable RNAseq analysis workflow with interactive report generation. - Venkat Sundar Gadepalli; Hatice Gulcin Ozer; Ayse Selen Yilmaz; Maciej Pietrzak; Amy Webb (BMC Bioinform., 2019)

High dimensional model representation of log-likelihood ratio: binary classification with expression data. - Ali Foroughi Pour; Maciej Pietrzak; Lori A. Dalton; Grzegorz A. Rempala (BMC Bioinform., 2020)

On the analysis of the human immunome via an information theoretical approach. - Maciej Pietrzak; Gerard Lozanski; Michael Grever; Leslie Andritsos; James S. Blachly; Kerry Rogers; Michal Seweryn (Int. J. Comput. Biol. Drug Des., 2020)

GPA-Tree: statistical approach for functional-annotation-tree-guided prioritization of GWAS results. - Aastha Khatiwada; Bethany J. Wolf; Ayse Selen Yilmaz; Paula S. Ramos; Maciej Pietrzak; Andrew Lawson; Kelly J. Hunt; Hang J. Kim; Dongjun Chung (Bioinform., 2022)

multi-GPA-Tree: Statistical approach for pleiotropy informed and functional annotation tree guided prioritization of GWAS results. - Aastha Khatiwada; Ayse Selen Yilmaz; Bethany J. Wolf; Maciej Pietrzak; Dongjun Chung (PLoS Comput. Biol., 2023)