Computational Biology and Language. - Madhavi Ganapathiraju; Narayanas Balakrishnan; Raj Reddy; Judith Klein-Seetharaman (Ambient Intelligence for Scientific Discovery, 2004)

Characterization of protein secondary structure. - Madhavi K. Ganapathiraju; Judith Klein-Seetharaman; Narayanaswamy Balakrishnan 001; Raj Reddy (IEEE Signal Process. Mag., 2004)

Digital Library of India: A Testbed for Indian Language Research. - Narayanas Balakrishnan; Raj Reddy; Madhavi Ganapathiraju; Vamshi Ambati (Bull. IEEE Tech. Comm. Digit. Libr., 2006)

Collaborative Discovery Through Biological Language Modeling Interface. - Madhavi Ganapathiraju; Vijayalaxmi Manoharan; Raj Reddy; Judith Klein-Seetharaman (Ambient Intelligence in Everyday, 2006)

TMpro web server and web service: transmembrane helix prediction through amino acid property analysis. - Madhavi Ganapathiraju; Christopher Jon Jursa; Hassan A. Karimi; Judith Klein-Seetharaman (Bioinform., 2007)

Transmembrane helix prediction using amino acid property features and latent semantic analysis. - Madhavi Ganapathiraju; Narayanaswamy Balakrishnan 001; Raj Reddy; Judith Klein-Seetharaman (BMC Bioinform., 2008)

Active learning for human protein-protein interaction prediction. - Thahir P. Mohamed; Jaime G. Carbonell; Madhavi Ganapathiraju (BMC Bioinform., 2010)

Active machine learning for transmembrane helix prediction. - Hatice U. Osmanbeyoglu; Jessica A. Wehner; Jaime G. Carbonell; Madhavi Ganapathiraju (BMC Bioinform., 2010)

N-gram analysis of 970 microbial organisms reveals presence of biological language models. - Hatice U. Osmanbeyoglu; Madhavi Ganapathiraju (BMC Bioinform., 2011)

Suite of Tools for Statistical n-Gram Language Modeling for Pattern Mining in whole genome Sequences. - Madhavi Ganapathiraju; Asia D. Mitchell; Mohamed Thahir; Kamiya Motwani; Seshan Ananthasubramanian (J. Bioinform. Comput. Biol., 2012)

Predicting gene ontology annotations of orphan GWAS genes using protein-protein interactions. - Usha Kuppuswamy; Seshan Ananthasubramanian; Yanli Wang; Narayanaswamy Balakrishnan 001; Madhavi Ganapathiraju (Algorithms Mol. Biol., 2014)

Learning structure in gene expression data using deep architectures, with an application to gene clustering. - Aman Gupta; Haohan Wang; Madhavi K. Ganapathiraju (BIBM, 2015)

Evaluation of Protein-protein Interaction Predictors with Noisy Partially Labeled Data Sets. - Haohan Wang; Madhavi K. Ganapathiraju (CoRR, 2015)

Evaluating Protein-protein Interaction Predictors with a Novel 3-Dimensional Metric. - Haohan Wang; Madhavi K. Ganapathiraju (CoRR, 2015)

Is the average shortest path length of gene set a reflection of their biological relatedness? - Varsha Embar; Adam Handen; Madhavi K. Ganapathiraju (J. Bioinform. Comput. Biol., 2016)

Demonstration Study: A Protocol to Combine Online Tools and Databases for Identifying Potentially Repurposable Drugs. - Aditi Chattopadhyay; Madhavi K. Ganapathiraju (Data, 2017)

Antibody Exchange: Information Extraction of Biological Antibody Donation and a Web-Portal to Find Donors and Seekers. - Sandeep Subramanian; Madhavi K. Ganapathiraju (Data, 2017)

Smart-log: An automated, predictive nutrition monitoring system for infants through the IoT. - Prabha Sundaravadivel; Kavya Kesavan; Lokeshwar Kesavan; Saraju P. Mohanty; Elias Kougianos; Madhavi Ganapathiraju (ICCE, 2018)

Smart-walk: An intelligent physiological monitoring system for smart families. - Prabha Sundaravadivel; Saraju P. Mohanty; Elias Kougianos; Venkata P. Yanambaka; Madhavi K. Ganapathiraju (ICCE, 2018)

Smart-Pillow: An IoT Based Device for Stress Detection Considering Sleeping Habits. - Laavanya Rachakonda; Saraju P. Mohanty; Elias Kougianos; Kalyani Karunakaran; Madhavi Ganapathiraju (iSES, 2018)

A Smart Sensor in the IoMT for Stress Level Detection. - Laavanya Rachakonda; Prabha Sundaravadivel; Saraju P. Mohanty; Elias Kougianos; Madhavi Ganapathiraju (iSES, 2018)

Everything You Wanted to Know about Smart Health Care: Evaluating the Different Technologies and Components of the Internet of Things for Better Health. - Prabha Sundaravadivel; Elias Kougianos; Saraju P. Mohanty; Madhavi K. Ganapathiraju (IEEE Consumer Electron. Mag., 2018)

Towards Extracting Supporting Information About Predicted Protein-Protein Interactions. - Adam Roth; Sandeep Subramanian; Madhavi K. Ganapathiraju (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

Stress-Log: An IoT-based Smart System to Monitor Stress-Eating. - Laavanya Rachakonda; Arham Kothari; Saraju P. Mohanty; Elias Kougianos; Madhavi Ganapathiraju (ICCE, 2019)

Consumer Technology-Based Solutions for COVID-19. - Himanshu Thapliyal; Katina Michael; Saraju P. Mohanty; M. B. Srinivas; Madhavi K. Ganapathiraju (IEEE Consumer Electron. Mag., 2021)

Drug contraindications in comorbid diseases: a protein interactome perspective. - Kalyani Karunakaran; Madhavi K. Ganapathiraju; Sanjeev Jain; Samir K. Brahmachari; N. Balakrishnan 002 (Netw. Model. Anal. Health Informatics Bioinform., 2024)