Estimation of protein function using template-based alignment of enzyme active sites. - Brett Hanson; Charles Westin; Mario Rosa; Alexander Grier; Mikhail Osipovitch; Madolyn L. MacDonald; Greg Dodge; Paule M. Boli; Cyprian W. Corwin; Haeja Kessler; Talia McKay; Herbert J. Bernstein; et al. (BMC Bioinform., 2014)

EvalDNA: a machine learning-based tool for the comprehensive evaluation of mammalian genome assembly quality. - Madolyn L. MacDonald; Kelvin H. Lee (BMC Bioinform., 2021)